Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RCOMT1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 349 / 6e-119 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 291 / 7e-96 O-methyltransferase family protein (.1) AT1G33030 263 / 2e-85 O-methyltransferase family protein (.1) AT1G21100 263 / 5e-85 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21130 260 / 5e-84 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21110 257 / 1e-82 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G51990 256 / 1e-82 O-methyltransferase family protein (.1.2) AT1G21120 256 / 3e-82 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G77530 256 / 3e-82 O-methyltransferase family protein (.1) AT5G53810 252 / 1e-80 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180600 [exp] 394 / 2e-136 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 393 / 4e-136 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 392 / 5e-136 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 392 / 5e-136 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 389 / 3e-134 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 380 / 2e-131 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 341 / 1e-115 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 341 / 1e-115 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 276 / 2e-90 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002667 [exp] 365 / 5e-125 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10005133 [exp] 362 / 6e-124 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10006146 [exp] 350 / 2e-119 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10015576 [exp] 339 / 8e-115 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10032929 [exp] 337 / 7e-114 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10002669 [exp] 325 / 2e-109 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10009442 [exp] 242 / 6e-77 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10023892 [exp] 207 / 2e-63 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1) Lus10014400 [exp] 206 / 9e-63 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10014825 [exp] 202 / 1e-61 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.014G106500.1 pacid=42762516 polypeptide=Potri.014G106500.1.p locus=Potri.014G106500 ID=Potri.014G106500.1.v4.1 annot-version=v4.1 ATGAACCAAAAGCACGGAGTGAGTCGATCAATGCCAATGGCCGCCTCTGTTACAGAAGAAGAAACTACCCAAAATGACAACCAAAACCAAACCGTAGAAG AAGAACGAGAGAGCTTTACTTGTGCCATGCTACTCGTGAATGCCTCAGTCCTTCCCCTGGCTTTAAAAACCGTCGTCGATCTTGGTGTCCTTGATGTTTT ATCCATGGCGGACCCTGATGTTGGGCTCACTGCTGCAGAGATTGCCGAGAGGATTCCTACCCGGAATCCGGAGGCCCCTGGAATGCTGGAGCGAATCCTC AGGCTGCTGATGAACGAGGGTGTTGTTTATTGCAGTTCTGACCTTTTTGACGAGGCCCCAATGAAGTACCGCTTGGGTCGTGTGGGTAAATACTTCGTGC GTGCTGAAAATGGGGTTTCTTTGGCCCCTTTGATGACCTTGGCTCACGACAAAGTCTACTTGGAAACCTGGTCACATCTGAAGGATGCAATTCTTGAGGG AGGAACTCCATTTGACAGGGCCCACCGGAAACCTTTGTCTGAGTACTCTGGTACACATTTGTTTAAGTACTCTGCTAGAGATGCCAGGTTTAGTCAAGTT TACAACACAGCAATGTTCAACCACACCACTCTAGTCTTTAAGAAGATACTGGAGTCCTACAGTGGTTTTGAGAACCTCAAGCAGGTGGTTGATGTTGGTG GTGGAATCGGAGTAGCCCTTAGCTTGATCACTTTCAAATACCCTTTTATCAATGCTATTAACTTTGACTTACCTCATGTTATCCAGAACGCCCCTCCACT TCCTGGTGTAAAGCATGTGGAGGGAGATATGTTCAAAAGTGTTCCAAAGGGAGATGCTATTATACTGAAGTGGATACTCCGTGACTGGGATGATGAACAC TGCTTGAAATTGTTAAAGAACTGCTACATGTCTGTTCCAGTTGATGGAAAGATAATCGTCGTGGAGCAAATTCTTCCAACTTTTGCAGAGATTAGTGCTG TTTCCAAAGACAAATCTCAACTTGATATGGTTTCACTGACTCAAACCCCAGGAGGAAAGGAACGGATGCAAGGTCACCTTTTCAATTTGGCAATCAGTGC TGGATTTAAAGGTATCAGTCACGTATCATATGTTTATCACTATTCGGTTATGGAGTTCTTGAAGTAG
AA sequence Show only first row Show all	>Potri.014G106500.1 pacid=42762516 polypeptide=Potri.014G106500.1.p locus=Potri.014G106500 ID=Potri.014G106500.1.v4.1 annot-version=v4.1 MNQKHGVSRSMPMAASVTEEETTQNDNQNQTVEEERESFTCAMLLVNASVLPLALKTVVDLGVLDVLSMADPDVGLTAAEIAERIPTRNPEAPGMLERIL RLLMNEGVVYCSSDLFDEAPMKYRLGRVGKYFVRAENGVSLAPLMTLAHDKVYLETWSHLKDAILEGGTPFDRAHRKPLSEYSGTHLFKYSARDARFSQV YNTAMFNHTTLVFKKILESYSGFENLKQVVDVGGGIGVALSLITFKYPFINAINFDLPHVIQNAPPLPGVKHVEGDMFKSVPKGDAIILKWILRDWDDEH CLKLLKNCYMSVPVDGKIIVVEQILPTFAEISAVSKDKSQLDMVSLTQTPGGKERMQGHLFNLAISAGFKGISHVSYVYHYSVMEFLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	0	1	Pt-RCOMT1.3
AT5G43240			Protein of unknown function (D...		Potri.001G247300 [exp]	2.44	0.9251
AT5G04080			unknown protein		Potri.006G043300 [exp]	3.46	0.9213
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	3.74	0.9263
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	4.47	0.9125
AT2G44930			Plant protein of unknown funct...		Potri.017G024866 [exp]	5.91	0.9007
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.010G104900 [exp]	6.32	0.9063	RDR903
AT5G03970			F-box associated ubiquitinatio...		Potri.005G124500 [exp]	6.63	0.8693
AT5G50610			unknown protein		Potri.015G099800 [exp]	6.92	0.8854
AT1G10380			Putative membrane lipoprotein ...		Potri.007G094800 [exp]	6.92	0.9016
AT2G44930			Plant protein of unknown funct...		Potri.017G024300 [exp]	6.92	0.9002

Compare expression of checked genes

Potri.014G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.