Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COMT4,Pt-RCOMT1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 415 / 6e-145 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 306 / 5e-102 O-methyltransferase family protein (.1) AT1G33030 305 / 7e-102 O-methyltransferase family protein (.1) AT1G51990 286 / 2e-94 O-methyltransferase family protein (.1.2) AT1G21120 285 / 7e-94 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G21130 285 / 1e-93 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21100 285 / 1e-93 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21110 283 / 1e-92 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT5G53810 278 / 6e-91 O-methyltransferase family protein (.1) AT1G76790 276 / 3e-90 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180600 [exp] 638 / 0 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 637 / 0 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 637 / 0 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 637 / 0 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 596 / 0 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 431 / 6e-151 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 419 / 1e-146 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106500 [exp] 373 / 6e-128 AT5G54160 349 / 8e-119 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 368 / 1e-126 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005133 [exp] 469 / 3e-166 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 456 / 7e-161 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10006146 [exp] 445 / 6e-157 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10002669 [exp] 445 / 1e-156 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10032929 [exp] 414 / 3e-144 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 411 / 4e-143 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10009442 [exp] 290 / 1e-95 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10030188 [exp] 276 / 4e-92 AT5G54160 213 / 9e-68 O-methyltransferase 1 (.1) Lus10014825 [exp] 255 / 3e-82 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10014400 [exp] 240 / 2e-76 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.014G106600.1 pacid=42764488 polypeptide=Potri.014G106600.1.p locus=Potri.014G106600 ID=Potri.014G106600.1.v4.1 annot-version=v4.1 ATGGTGGGAGTCCAATATGCGTCCAGTTTCTATCTAAAAATCAACCAACCTCCTCCAAGAACGAACATGGGATCTTTTATAGAAAGTCACATTGGCCAAG TTGATGAAGCAAAAGATGAAAACTTTGGATATGCCATGCAACTAGCGTTGAGCTCAGTGCTACCCATGACTATGTATTCTGCAATTCAGCTTGGCATTTT TGAGATAATAGCCAAAGCAGGTCCAGATGCCAAACTCTCTGCTTCAGATGTTGCTGCCCAGTTGCCCACAAAGAACCCAGATGCACCCATGATGCTGGAC CGTATACTAAGGCTCTTGGCTAGCCACGATGTGCTTGGTTGCTCTGTGGATGGCTCGGAGAGGCTCTACAGTCTGGCTCCTGTGTCCAAGCACTACGTGC GTAACAAAGATGGTGTTTCTTTGGGCCCCTTCATGGCCTTGATTCAAGACAACGTTTTCTTGCAGAGTTGGTCTCAACTAAAAGACGCAGTTCTTGAAGG AGGAGTTGCATTTGACAGGGTCCATGGAGCTCACGCCTTTGAGTACCCTGGCTTGGACCCTAGGTTCAACCAGGTTTTCAACACAGCAATGTACAACCAA ACTACTGTAGTCCTAGAAAATATGCTTGAGGCATACACTGGTTTTAAGAACCTGAAACAGCTGGTTGAAATTGGAGGCGGCATGGGACACACTATAAAGG CAATAATCTCTAAGTATCCCCAAATTAAGGGTATCAATTTCGACTTGCCACATGTTATAGAGCATGCTCCATCCTGTCCTGGTGTGGAACACGTGGGAGG AGATATGTTTGAAAGTGTTCCAAAAGGAGATGCTATTTTTTTGAAGTGGATACTTCATGACTGGAGTGATGATCACTGCTTGAAGTTGTTGAAGAACTGC TACAAAGCTATTCCAGATAATGGGAAGGTGATCGTTATGGAATCAGTTCTTTCAATCACCGCCAAGACAAGCCCTGCTGCGAGAGCGATCTCTCAACTTG ATGTGCTGATGATGACTCAAAACCCAGGAGGGAAAGAACGGACCGAACATGAATTCATGGCCCTGGCCACTGGAGCTGGATTCCGTGGAATCAAATACGA AGCCTTTGTTTGTAATTTTTGGGTGATGGAGTTCTTCAAGTAG
AA sequence Show only first row Show all	>Potri.014G106600.1 pacid=42764488 polypeptide=Potri.014G106600.1.p locus=Potri.014G106600 ID=Potri.014G106600.1.v4.1 annot-version=v4.1 MVGVQYASSFYLKINQPPPRTNMGSFIESHIGQVDEAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNPDAPMMLD RILRLLASHDVLGCSVDGSERLYSLAPVSKHYVRNKDGVSLGPFMALIQDNVFLQSWSQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQ TTVVLENMLEAYTGFKNLKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFESVPKGDAIFLKWILHDWSDDHCLKLLKNC YKAIPDNGKVIVMESVLSITAKTSPAARAISQLDVLMMTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106600 [exp]	0	1	COMT4,Pt-RCOMT1.6
AT2G17710			unknown protein		Potri.005G107900 [exp]	3.46	0.9740
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027100 [exp]	3.74	0.9758
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027000 [exp]	4.24	0.9779
AT2G24600			Ankyrin repeat family protein ...		Potri.014G050532 [exp]	4.24	0.9752
AT3G57390	MADS	AGL18	AGAMOUS-like 18 (.1.2)		Potri.006G048700 [exp]	6.32	0.9277	AGL15.2
AT1G01490			Heavy metal transport/detoxifi...		Potri.004G073100 [exp]	8.12	0.9371
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026900 [exp]	9.48	0.9737
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G134701 [exp]	9.59	0.9206
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411000 [exp]	10.29	0.9092
					Potri.007G069901 [exp]	10.39	0.9074

Compare expression of checked genes

Potri.014G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.