Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61960 652 / 0 Protein kinase superfamily protein (.1.2) AT2G37840 370 / 3e-118 Protein kinase superfamily protein (.1.2) AT3G53930 358 / 6e-114 Protein kinase superfamily protein (.1.2) AT1G49180 250 / 1e-76 protein kinase family protein (.1.2) AT2G30360 178 / 2e-49 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G57630 177 / 5e-49 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) AT1G30270 174 / 2e-47 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 172 / 4e-47 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G29230 171 / 9e-46 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT1G01140 168 / 2e-45 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181000 [exp] 1116 / 0 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 449 / 4e-149 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 367 / 4e-117 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G011600 [exp] 292 / 1e-93 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G007200 [exp] 291 / 2e-93 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 264 / 3e-83 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.011G067600 [exp] 173 / 2e-46 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.003G120800 [exp] 172 / 4e-46 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.009G021000 [exp] 170 / 4e-46 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005135 [exp] 712 / 0 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 700 / 0 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 357 / 2e-113 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 356 / 9e-113 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 296 / 2e-95 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 246 / 4e-74 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10020580 [exp] 167 / 9e-47 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10038889 [exp] 172 / 2e-46 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10030210 [exp] 170 / 3e-46 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10028115 [exp] 169 / 6e-46 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G107000.1 pacid=42764107 polypeptide=Potri.014G107000.1.p locus=Potri.014G107000 ID=Potri.014G107000.1.v4.1 annot-version=v4.1 ATGGAACCTAATCAGACTCGTTTGGTCGGTGATTATATACTTGGCTCCAGAATCGGGCGGGGTTCTTTTGCCGTTGTTTGGAGGTCTATACACCGTTTTT CCGGTTTACAAGTTGCGGTTAAAGAAATTGACAAAAAACTGCTTACTCCAAAAGTTAGTGAGAATTTGCTTAAAGAAATTTCTATTCTTAGCACTATAAA TCACCCCAACATTATTCGCTTTTTTGAGTCTATCGAGACTGAGGACAGGATATTTCTTGTACTGGAATACTGTGAGGGAGGTGATCTTGCTTTTTATATT CAACGCCATGGGAAAGTGACTGAGGCTGTTGCAAGGCACTTTATGAGGCAATTGGCTGTGGGGTTGCAAGTGCTTCAAGAAAAACATCTTATTCACAGGG ACTTGAAACCACAGAACCTACTTTTGTCATCAAATGATTTAACTCCGCAATTGAAGATAGGTGATTTTGGCTTTGCAAGGTCCTTGGCATCATCAGACTT GGCTGATACACTATGCGGCTCACCATTATACATGGCTCCAGAGATTATTCAGAATAAAAAGTATGATGCAAAGGCTGACTTATGGAGTGTTGGCGCAATT TTATTCCAGCTGGTAACTGGGAAGCCGCCATTTGATGGCAATAGTCAATATCAGCTTTTCCAGAATATTTTGACATCTACAGAGCTGAGGTTTCCACAAG GTGCTTTGGAGGAGCTGCATCCAGATTGTGTTGATCTATGCAGAGGCCTTTTACGCCGAAACCCAGTTGAGAGGTTAACATTCAAAGAGTTCTTCAATCA CAAGTTCCTTGGGGAGCCAAGGCTATTGGTGAGTGCCAAATCTTCTCCACTTCCACAAGTGAAATCAGTGGCTGGGCAGTTTGATGCGTCTGCTTCTGAT ACAAGGTCTCAACTGGAGCATGACAACTTAACAGTGCTGGAAAAGGTCTGTGACAGAAATGAAAGTGTTCATGGGTCTTTGCCAAATATTGTGCATGATA GGATGGGGAAATCTGCTGATGGCAGCCAATCTTTGTCGGATCAGCTTCGAGTAGCTGATTTAATGGAGTCCATAGAGAAGGATTACGTTATTGTAAATCG TCATTTTGCTTCAATGGAAAATTTCTCTTATTACCTTGAGACATCCCTGCATGATAGCTCCACCAGCAAAGCTTCCATATACCTGCCTCAGAAGAATAAC CAGGATACAGTAGTTGCTACACAAACAAAGGAGTTTACTGGTAGTTCTGTTGGCAGTGCAAACAATCCTGAGGTTCATGGATCAGAACCATTAAGTGCGT CATGTGTGCCAACTATCTTAAGGGAAGCACAACGACTACCCATACTACATCCCTCGATTAAGCTTCAATTCTTAAATCAGTATGCACAGGAAATTTCAGA ACTAGCCCAAGAAAAGTATGATGCAGGAATGTTTCTAGAATCATTTTCAGTTGAGCTTGTTGTTTTGGCTATATGGAAGAGAGCTCTCGAAATTTGCGAA CACTGGGTGGCCTCTACTGGAGGGAGCAAATTACATGAAAGCAGTTCAGCCAATGAATCTGCCCTTGTTTATGGAGGCACAAATTTAACTCCACCTGCAA TTGGGAAATTGGATTTTATTGAGCCTTCATCAGCCTGCAAGTGGGCAGAAAAAGGGTTCATTCTTGCATTTGATCATGCAGAGAAGTTGTCAAATAGCCT CCGAGACATGGATGCTGCTGCTGAGATGCCTGATGCCATGGAGCTGATATTCCAAAAAGCACTTGCTGTTGGGACAAGTGGTGCTGTAGATGAGTATATG GAGAACAAGGGTGGTGCTGATAACTCATATTCCAAAGCAATGCTTCTGCTACATTTTATAATGGAAGAAGCAACATCTCTCCCATTGAACCCTCCATTTT CATTAACTCCTGCTAGTAGGAAGCGAGTCAAAAGCTACATTTTGAACTTGCAGTCTCGTAGGTCTCGCTTTTCAATGTTGCAGCCATTTCCTGAACAATC CTCGGATTCACTTACCAAGTAA
AA sequence Show only first row Show all	>Potri.014G107000.1 pacid=42764107 polypeptide=Potri.014G107000.1.p locus=Potri.014G107000 ID=Potri.014G107000.1.v4.1 annot-version=v4.1 MEPNQTRLVGDYILGSRIGRGSFAVVWRSIHRFSGLQVAVKEIDKKLLTPKVSENLLKEISILSTINHPNIIRFFESIETEDRIFLVLEYCEGGDLAFYI QRHGKVTEAVARHFMRQLAVGLQVLQEKHLIHRDLKPQNLLLSSNDLTPQLKIGDFGFARSLASSDLADTLCGSPLYMAPEIIQNKKYDAKADLWSVGAI LFQLVTGKPPFDGNSQYQLFQNILTSTELRFPQGALEELHPDCVDLCRGLLRRNPVERLTFKEFFNHKFLGEPRLLVSAKSSPLPQVKSVAGQFDASASD TRSQLEHDNLTVLEKVCDRNESVHGSLPNIVHDRMGKSADGSQSLSDQLRVADLMESIEKDYVIVNRHFASMENFSYYLETSLHDSSTSKASIYLPQKNN QDTVVATQTKEFTGSSVGSANNPEVHGSEPLSASCVPTILREAQRLPILHPSIKLQFLNQYAQEISELAQEKYDAGMFLESFSVELVVLAIWKRALEICE HWVASTGGSKLHESSSANESALVYGGTNLTPPAIGKLDFIEPSSACKWAEKGFILAFDHAEKLSNSLRDMDAAAEMPDAMELIFQKALAVGTSGAVDEYM ENKGGADNSYSKAMLLLHFIMEEATSLPLNPPFSLTPASRKRVKSYILNLQSRRSRFSMLQPFPEQSSDSLTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	0	1
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	2.82	0.7300
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.002G205800 [exp]	4.00	0.7018
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	8.66	0.6854
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Potri.001G035700 [exp]	10.90	0.6827
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	13.85	0.6991
AT1G57600			MBOAT (membrane bound O-acyl t...		Potri.013G000600 [exp]	14.42	0.6504
AT5G64010			unknown protein		Potri.005G064800 [exp]	14.96	0.6467
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	15.49	0.6840	ARL1.3
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	18.41	0.6993	Pt-UBP15.2
AT3G49490			unknown protein		Potri.015G003700 [exp]	18.52	0.6021

Compare expression of checked genes

Potri.014G107000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.