Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01050 404 / 1e-145 ATPPA1 pyrophosphorylase 1 (.1) AT2G46860 396 / 2e-142 ATPPA3 pyrophosphorylase 3 (.1) AT4G01480 380 / 6e-136 ATPPA5 pyrophosphorylase 5 (.1) AT3G53620 358 / 3e-127 ATPPA4 pyrophosphorylase 4 (.1) AT2G18230 323 / 2e-113 ATPPA2 pyrophosphorylase 2 (.1) AT5G09650 79 / 3e-17 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181300 [exp] 432 / 1e-156 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 358 / 2e-127 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.007G022700 [exp] 355 / 6e-126 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.009G081200 [exp] 79 / 2e-17 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 77 / 1e-16 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005139 [exp] 388 / 4e-139 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10030179 [exp] 387 / 5e-139 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10024422 [exp] 363 / 2e-129 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 366 / 2e-128 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10028320 [exp] 358 / 1e-127 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10041767 [exp] 358 / 2e-127 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 354 / 8e-126 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 354 / 9e-126 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10037239 [exp] 79 / 2e-17 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 79 / 2e-17 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [poplar] [flax] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.014G107100.1 pacid=42764452 polypeptide=Potri.014G107100.1.p locus=Potri.014G107100 ID=Potri.014G107100.1.v4.1 annot-version=v4.1 ATGAGTGATGAAACGAAAACACAAGAAAATGAAGTTGTTGAAGCTAAGCGCCAAGCACCCCGTCTGAACGAGAGAATCCTTTCATCCTTGTCAAGGAGAA CTGTTGCTGCACATCCTTGGCATGATCTTGAAATTGGGCCTGGAGCTCCCCACATTTTCAATGTTGTGGTTGAGATAACAAAAGGAAGTAAGGTCAAATA CGAACTGGACAAGAAGACAGGACTAATCAAGGTCGATCGGATTTTATATTCCTCGGTGGTCTATCCCCACAACTATGGTTTCATCCCTCGCACATTATGC GAAGACAATGATCCCTTGGATGTTTTGGTACTCATGCAGGAGCCTGTCCTTCCTGGCTGTTTTCTGCGAGCCAGGGCTATTGGACTTATGCCCATGATTG ACCAGGGAGAGAAAGACGACAAGATTATTGCGGTTTGTGCTGATGATCCAGAGTACAAGCACTACACTGACATCAGGGAGCTGGCCCCTCATCGTCTTTC TGAGATCCGCCGTTTCTTTGAAGATTACAAGAAAAATGAGAACAAGGAGGTTGCAGTTAATGACTTTTTACCTTCAAATTCTGCTGTTGAAGCTATCCAG TACTCAATGGACCTTTATGCTGAGTACATTCTGCACACGCTGCGGCGGTAG
AA sequence Show only first row Show all	>Potri.014G107100.1 pacid=42764452 polypeptide=Potri.014G107100.1.p locus=Potri.014G107100 ID=Potri.014G107100.1.v4.1 annot-version=v4.1 MSDETKTQENEVVEAKRQAPRLNERILSSLSRRTVAAHPWHDLEIGPGAPHIFNVVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLC EDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKHYTDIRELAPHRLSEIRRFFEDYKKNENKEVAVNDFLPSNSAVEAIQ YSMDLYAEYILHTLRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.014G107100 [exp]	0	1
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Potri.018G071700 [exp]	10.09	0.8907
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.005G108000 [exp]	11.22	0.8977
AT4G35830		ACO1	aconitase 1 (.1.2)		Potri.005G108100 [exp]	16.24	0.8812	Pt-ACO.1
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.008G083900 [exp]	16.55	0.8920	GAPDH1.4
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.004G074900 [exp]	22.47	0.8851
AT5G15320			unknown protein		Potri.002G024900 [exp]	28.14	0.8870
AT1G12310			Calcium-binding EF-hand family...		Potri.003G115000 [exp]	30.19	0.8840
AT5G58375			Methyltransferase-related prot...		Potri.013G155800 [exp]	37.94	0.8643
AT1G80510			Transmembrane amino acid trans...		Potri.001G204400 [exp]	38.65	0.8494
AT1G26940			Cyclophilin-like peptidyl-prol...		Potri.010G012900 [exp]	39.15	0.8827

Compare expression of checked genes

Potri.014G107100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.