Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01020 227 / 5e-75 ARV1 Arv1-like protein (.1.2) AT4G01510 225 / 2e-74 ARV2 Arv1-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181700 [exp] 122 / 1e-34 AT1G01020 84 / 1e-20 Arv1-like protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010099 [exp] 262 / 6e-89 AT1G01020 205 / 2e-66 Arv1-like protein (.1.2) Lus10007219 [exp] 168 / 6e-53 AT1G01020 139 / 2e-41 Arv1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04161 [poplar] [flax] Arv1 Arv1-like family
Representative CDS sequence Show only first row Show all	>Potri.014G107300.3 pacid=42764406 polypeptide=Potri.014G107300.3.p locus=Potri.014G107300 ID=Potri.014G107300.3.v4.1 annot-version=v4.1 ATGGAGCCTAGATGTGTAGAGTGTGGATTTCCGATCAAAACTCTTTTCGTCCAATACTCACCTGGCAATATTCGGCTCATGAGATGTGAGAATTGCAAAG CAGTTGCAGACGAGTACATCGAATGTGAATTCATGATTATTTTGATTGATCTGATTCTGCACAAGACAAAAGCGTATAGACATCTTCTCTTCAATGTAAT TAATCAGCATACCGTCAATTTTGAGGGTTCGTTATGGAAGTCAATCTTTGCGTTTCTCCTTCTGGATGCTTATAGAAGTCTGCTTTTGAAAAGAAATGAG GGAGAGTGGGGTTCTTCCATGAGTTTTTCTTCAATTGTTTGGACATTCGAAGAGATTGTCGTGGATGTCTTTGTCGGAAACTTTGTGTTTTTCTGTATTT TTCTTCTTTCAATGAGGCTGATGCTAAACACATCGATTCAAATCTCCAGGTGCAAAGACATTTTGCTTGCCATCCTAGTTTCAAGTTACTTCAAGATTTT TCTTATTGCCACAATGGTTTGGGAATTTCCATCTTCTGTAATCTTCATCATTGATTTATTTGTTTTATCATCCAACACCGTGGCATTAAAAGTGATCACT GATTCAGCCATGAATAGATGCATTGCAGCCTGCTTCTGTGCACAGGCTCTTAAGTTGCTTGTCACTCAGGGGCCCGCTCGGAGATCGTTGAGATTTTAA
AA sequence Show only first row Show all	>Potri.014G107300.3 pacid=42764406 polypeptide=Potri.014G107300.3.p locus=Potri.014G107300 ID=Potri.014G107300.3.v4.1 annot-version=v4.1 MEPRCVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAYRSLLLKRNE GEWGSSMSFSSIVWTFEEIVVDVFVGNFVFFCIFLLSMRLMLNTSIQISRCKDILLAILVSSYFKIFLIATMVWEFPSSVIFIIDLFVLSSNTVALKVIT DSAMNRCIAACFCAQALKLLVTQGPARRSLRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	0	1
AT1G67060			unknown protein		Potri.015G045900 [exp]	1.73	0.7917
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	4.47	0.7900
AT3G08880			unknown protein		Potri.012G107200 [exp]	4.89	0.7635
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	5.29	0.7379
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	5.65	0.7812
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.005G010600 [exp]	5.65	0.8033
AT2G23093			Major facilitator superfamily ...		Potri.007G052700 [exp]	11.95	0.7637
AT2G16405			Transducin/WD40 repeat-like su...		Potri.009G121100 [exp]	12.72	0.7382
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Potri.008G095700 [exp]	18.16	0.6816
AT5G23200			unknown protein		Potri.005G092000 [exp]	20.63	0.7835

Compare expression of checked genes

Potri.014G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.