Plant FIBer expression Database

Potri.014G108300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41610 288 / 1e-96 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030172
[exp]
358 / 3e-124 AT2G41610 280 / 2e-93 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G108300.1 pacid=42763824 polypeptide=Potri.014G108300.1.p locus=Potri.014G108300 ID=Potri.014G108300.1.v4.1 annot-version=v4.1
ATGCTGTACCGACGGGACCTGGCATTCCGATCCGAATGGCCTTCAGAAGACGTCCAGGCGATATTCTTCAAATGTGTTAGATGGCAGGTAGAGGATACAA
TGGATCCAATCAACTGTCCTTACCATTACTACTGTGACAGCACTTACCCTGGGAATCATCCGCCCTATGTAGATGTTCTAGCTTTTCTCTTTACAACAGC
TTTGTACCTGGTAACACTAGCCATTATGGTAGTAGATATATCAAGACGTGGTCGAACATATCTCAGAGAATCAAAGAGATACCTGCAACCATCTGGTCCA
GTCTCCCTCCCTCTAATCCTCTTAGTACTTGCCAAGGGTTCACGGATCAATACCGTATTCCCTCTCTCCTGCTTTGGACCAGCAATCCTTCAGCTGCTTC
AGGTATCTGCCCTCACATTCGATAGCCGCATTGAAAAAGATGTCAGGTATGCATTCCTCCAGGCATCAACCATTTCTGGAATTCTACATGCAAGCCTGTA
CTTGGATTCCATTATCTTACCCTACTATACAGGTTTTGATGCTCTAGTTTCATCTACATTTTCTGGGGAGTGCCCAACTTGTGTTTGCCGAAAAGAGGTT
TTGGTTGTGGGTGGAAGGTTGATCAGGTACAGGGGGTGGTCATTAACTACATTTTTGGTTATAGGAGTTCTGTGTTCAAGAATTTTATGCAGGGTGACTG
GAGAGAATAAGAGCAAGATCATGTCAATCAAGACCTTGCTGGAAAGTTTAGGTTTGATCTTGATCACCGTGGACTGCATTTATCTAATAAGGAGAAGTCC
AGAACAGTCTCTGATGCGAATTGCTGCTTTTGGAGGTGTGCTCGTGTTAATTTGCCTTCAAATGATAAAGAAGATGTCTGCTCAGATGATCCAATGGCAT
TCTGCACATGTAAAGTTAGACAGGTAG
AA sequence
>Potri.014G108300.1 pacid=42763824 polypeptide=Potri.014G108300.1.p locus=Potri.014G108300 ID=Potri.014G108300.1.v4.1 annot-version=v4.1
MLYRRDLAFRSEWPSEDVQAIFFKCVRWQVEDTMDPINCPYHYYCDSTYPGNHPPYVDVLAFLFTTALYLVTLAIMVVDISRRGRTYLRESKRYLQPSGP
VSLPLILLVLAKGSRINTVFPLSCFGPAILQLLQVSALTFDSRIEKDVRYAFLQASTISGILHASLYLDSIILPYYTGFDALVSSTFSGECPTCVCRKEV
LVVGGRLIRYRGWSLTTFLVIGVLCSRILCRVTGENKSKIMSIKTLLESLGLILITVDCIYLIRRSPEQSLMRIAAFGGVLVLICLQMIKKMSAQMIQWH
SAHVKLDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41610 unknown protein Potri.014G108300
[exp]
0 1
AT4G27435 Protein of unknown function (D... Potri.011G122700
[exp]
1.00 0.9834
AT3G61750 Cytochrome b561/ferric reducta... Potri.014G098700
[exp]
1.41 0.9667
AT5G54240 Protein of unknown function (D... Potri.011G126300
[exp]
3.00 0.9513
AT3G23090 TPX2 (targeting protein for Xk... Potri.010G076200
[exp]
5.47 0.9500
AT1G72230 Cupredoxin superfamily protein... Potri.002G101300
[exp]
5.47 0.9383
AT1G24030 Protein kinase superfamily pro... Potri.010G095900
[exp]
5.91 0.9479
AT3G59110 Protein kinase superfamily pro... Potri.002G059000
[exp]
6.70 0.9408
AT3G16920 ATCTL2 chitinase-like protein 2 (.1) Potri.010G141600
[exp]
7.21 0.9501
AT4G27880 Protein with RING/U-box and TR... Potri.012G015500
[exp]
8.00 0.9335 SINAT4.2
AT1G50010 TUA2 tubulin alpha-2 chain (.1) Potri.002G111900
[exp]
8.12 0.9497

Potri.014G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.