Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02280 423 / 3e-150 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT5G05000 384 / 6e-135 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT4G02510 128 / 8e-33 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT3G16620 127 / 1e-32 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT2G16640 122 / 5e-31 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT5G20300 102 / 4e-24 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT4G15810 46 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09950 45 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09940 45 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33900 43 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183400 [exp] 559 / 0 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.009G131200 [exp] 130 / 1e-33 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 127 / 1e-32 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.008G224900 [exp] 127 / 2e-32 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131300 [exp] 126 / 3e-32 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.010G014300 [exp] 125 / 5e-32 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 124 / 1e-31 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.006G063500 [exp] 90 / 7e-20 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 90 / 8e-20 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010292 [exp] 440 / 5e-157 AT1G02280 390 / 1e-137 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Lus10009860 [exp] 422 / 2e-149 AT1G02280 374 / 8e-131 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Lus10028706 [exp] 134 / 6e-35 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 133 / 1e-34 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10027835 [exp] 128 / 8e-33 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10006048 [exp] 126 / 3e-32 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 108 / 4e-26 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 107 / 8e-26 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10034170 [exp] 106 / 2e-25 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10043414 [exp] 106 / 2e-25 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.014G109400.1 pacid=42763886 polypeptide=Potri.014G109400.1.p locus=Potri.014G109400 ID=Potri.014G109400.1.v4.1 annot-version=v4.1 ATGGGGTCTATACTTCGTGACTGGCAAGGGTTCCACCAATTCCCTGCTGCCACACAGTCCAAACTTGTTGAATTGTTTGCCAAATTAAAGGAAGAGGGTG TTAATAAAATGACCATACTTGTTATGGGCAAAGGTGGAGTTGGGAAGTCGTCCACTGTCAATTCTCTTCTCGGAGAGCGAGTGGTCAATGTGAGCTCCTT CCAGTCAGAGGGATTCAGACCAGTCATGGTCTCACGTGACCGGGCTGGATTCACGTTGAACATCATTGACACCCCAGGCCTTGTGGAAGGTGGTTATGTC AACTACCAAGCTCTGGAGTTGATTAAACGGTTCCTATTGAATAAGACTATAAATGTTTTGCTCTATGTTGACCGCTTGGATGCATATAGAGTGGATGACT TGGATAAGCAGATTATTAGTGCTATAACTGATAGTTTTGGAAAAGAAATATGGAACAAAAGTTTGCTTGTCCTCACTCATGCTCAGCTTTGCCCACCAGA CGATCTCAGTTATGATGTCTTTTGTGGTCGAAGATCAGAGGCTGTTTTGAAGACTATTCGGATGGGAGCACAGATTAGGAAGCGAGATTTTGAGGATTCT GCTGTTCCAGTTGGTTTGGTTGAAAACAGTGGGAGATGCAACAAAAATGAGAATGATGAAAAGATTCTCCCAAATGGGGATGCTTGGATTCCGAGCTTGG TAAAAGAGATTGTTGGGGTTGCAACAAATGGGAAGAAATCTCTTTTAGTTGACGAGAAGTTGGTTAATGGATCCGAGTCAAATGACAGGGGAAAGATATT TATTCCTCTTATCTTGGGGGTCCAGTGGCTTCTTGTGAAATGGATTCAACGAGAAATAAAAAAAGATATTGTGAAAGGGGGCAAGTATATTTGA
AA sequence Show only first row Show all	>Potri.014G109400.1 pacid=42763886 polypeptide=Potri.014G109400.1.p locus=Potri.014G109400 ID=Potri.014G109400.1.v4.1 annot-version=v4.1 MGSILRDWQGFHQFPAATQSKLVELFAKLKEEGVNKMTILVMGKGGVGKSSTVNSLLGERVVNVSSFQSEGFRPVMVSRDRAGFTLNIIDTPGLVEGGYV NYQALELIKRFLLNKTINVLLYVDRLDAYRVDDLDKQIISAITDSFGKEIWNKSLLVLTHAQLCPPDDLSYDVFCGRRSEAVLKTIRMGAQIRKRDFEDS AVPVGLVENSGRCNKNENDEKILPNGDAWIPSLVKEIVGVATNGKKSLLVDEKLVNGSESNDRGKIFIPLILGVQWLLVKWIQREIKKDIVKGGKYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.014G109400 [exp]	0	1
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	1.41	0.8226
AT1G27435			unknown protein		Potri.001G325000 [exp]	1.41	0.8338
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	4.00	0.8036
AT4G29830		VIP3	vernalization independence 3, ...		Potri.006G145800 [exp]	5.29	0.8189
AT2G31490			unknown protein		Potri.006G077400 [exp]	8.94	0.7923
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.006G141300 [exp]	9.74	0.8121
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Potri.005G180500 [exp]	15.29	0.8215	Pt-PBC2.1
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004500 [exp]	15.68	0.8079
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.015G098600 [exp]	17.74	0.8076
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Potri.006G149700 [exp]	20.56	0.7409

Compare expression of checked genes

Potri.014G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.