Plant FIBer expression Database

Potri.014G109500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46900 574 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G183500
[exp]
968 / 0 AT2G46900 559 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036338
[exp]
697 / 0 AT2G46900 630 / 0.0 unknown protein
Lus10010275
[exp]
692 / 0 AT2G46900 635 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF04910 Tcf25 Transcriptional repressor TCF25
Representative CDS sequence
>Potri.014G109500.1 pacid=42762577 polypeptide=Potri.014G109500.1.p locus=Potri.014G109500 ID=Potri.014G109500.1.v4.1 annot-version=v4.1
ATGTCAGTTAGGTTATTGAAGAGAGTCCTGAAAGAACAAGAACTACAACAGCAACAGCATCATGATGAGTCTGAGGAGGAAGAAGGTGAATCTCCTTATT
CGGGAACTCGCCCTGCAATAAACCCATTTGACCTTCTCAATGATGATGACGTTGATCAGCTGCAGGAGAATGAGCCAGAAATTGATGATGAAATGGTAGT
GGGAAACAATCACAAACAAGAATTGTCTGGGATGAAAAGCATGGCTGGTGCCATTTCAACATCCAATCAGAAATCAAAGAAAAAGAAGAAAAAGAAAAGC
AAGACTGGTTTGTCTTCAGTTACAAATAAAGTCAAAGAACCTTTTGATGACATGTTAGATACTTTATCCTTGGATGTTAATTCTTCAAGACATCAACCTT
GCCCCACCAAAACCAAACCAGAAACTTCCAAACTTTGTGCAGAATTTGTGAAACAGTGTGCACCTTCCGCCTTACAAGTGGATCCGAAATGTTTGAATCC
TGAGAACGAGCTAAGGAGAATTTTTGGTTCTAAGGTGGTGAAATCATTTGAGAAAAGTAATCAAGCCAGCAGTTCTAGACAGGTTATTGGAGGCAGACGT
GGAGCCCATCATACTAGAAGGACTATTTTAGTCTCTCCATCAGAACATTGGCCTCGGTGGGATGGATCTTTATCCATGGAGTTTTTGGAAACTAAGGATG
GATACCACCATTTTAGGTATGTTCACTCATCTTCCTCTGATCAAGCGCAGAGGACATTTGAAGCTGCCAAGGCTATTCATGATCTGAATGGCATAGCAAG
CATTCTGTTATACCACCCTTATCACTTGGATTCACTTGTAACAATGGCAGACTATTTTAAATTTGTGGGTGAGAATCAAATGTCAGCTGATTCTATTGCG
AAGAGTTTATATGCCTTGGAATGTGCATGGCATCCCACATTCTCCCCCTTGCAGGCAAATTGCCAGTTGAAGATCTGCCATGAAACGAACAAGCCACTGT
TTACAACACTTTTCACTCACATGAAAAATTTGGACAGACGTGGATGTCATCGTTCTGCTCTTGAGGTTTGCAAACTGTTGCTTTCATTGGATTTAGATGA
TCCAATGGGGGCCATGTTCTGTGTTGATTACTTTGCTTTGAGGGCTGAGGAGTATGCATGGTTGGAATGGTTTTCTGAAGACTATAAAAGTGATAACTCC
TTGTGGCTGTTTCCAAATTTCTCATACTCTCTTGCCATTTGCCGGTTTTATCTTGAGCGAGAGGAACCCTCAAAAGATGCTGATACTTGTGCTACAAAGT
CTAACTCAGCTGATTTGATGAAGCAGGCTTTAATGCTTCACCCGTCAGTCCTTAAAAAGTTAGTGGCCAAGGTACCTTTGAAAGATCAGGCATGGACAAA
TATAATAAAGCATGTGTTTTTTCGATCAGAGAAAACAGGGTCTGCGTCCTTGGATCATCTGATTAACATATATGTAGAGAAAAGTTATATCATATGGAGG
CTTCCAGACTTGCAAAAATTGCTTCGTGTCAGTGCTTTACAAGTGATCGAAATTCTAGAACATAGTACCAGTGATGCCAAGGATTGGGCTTGTGTGAGAA
AAGAGGCCTTTTCATCTGAAAACAATGAGTACGGCCATTTGCTGGTTTCAGACTTTTCTGATACAGTTCCAACACTTCCACCTGAGAACTTGCAAAACTT
CATGGTTGATCCAAGGATGAGGGAGCCTGAGCGAAATGGGGGACAAATTGCCAACCCACTTGATGGTGGCCCTGCTCCACGTGATGTTGCGAATCGCAAT
GCATTGGCTGTCTTGTTTGAATCCATGTTGCCATGGGTTAATTATGGGGGTAGAGGGGATGGAGGCAATGAGGAGAACCAAGTTAACGAACATGAGTGA
AA sequence
>Potri.014G109500.1 pacid=42762577 polypeptide=Potri.014G109500.1.p locus=Potri.014G109500 ID=Potri.014G109500.1.v4.1 annot-version=v4.1
MSVRLLKRVLKEQELQQQQHHDESEEEEGESPYSGTRPAINPFDLLNDDDVDQLQENEPEIDDEMVVGNNHKQELSGMKSMAGAISTSNQKSKKKKKKKS
KTGLSSVTNKVKEPFDDMLDTLSLDVNSSRHQPCPTKTKPETSKLCAEFVKQCAPSALQVDPKCLNPENELRRIFGSKVVKSFEKSNQASSSRQVIGGRR
GAHHTRRTILVSPSEHWPRWDGSLSMEFLETKDGYHHFRYVHSSSSDQAQRTFEAAKAIHDLNGIASILLYHPYHLDSLVTMADYFKFVGENQMSADSIA
KSLYALECAWHPTFSPLQANCQLKICHETNKPLFTTLFTHMKNLDRRGCHRSALEVCKLLLSLDLDDPMGAMFCVDYFALRAEEYAWLEWFSEDYKSDNS
LWLFPNFSYSLAICRFYLEREEPSKDADTCATKSNSADLMKQALMLHPSVLKKLVAKVPLKDQAWTNIIKHVFFRSEKTGSASLDHLINIYVEKSYIIWR
LPDLQKLLRVSALQVIEILEHSTSDAKDWACVRKEAFSSENNEYGHLLVSDFSDTVPTLPPENLQNFMVDPRMREPERNGGQIANPLDGGPAPRDVANRN
ALAVLFESMLPWVNYGGRGDGGNEENQVNEHE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46900 unknown protein Potri.014G109500
[exp]
0 1
AT2G10950 BSD domain-containing protein ... Potri.018G125400
[exp]
3.74 0.7275
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Potri.012G134800
[exp]
5.47 0.7579
AT4G16530 Family of unknown function (DU... Potri.001G123200
[exp]
7.34 0.7508
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Potri.009G107600
[exp]
11.40 0.7351 2OGox7
AT3G58090 Disease resistance-responsive ... Potri.006G216000
[exp]
15.19 0.7330
AT3G43220 Phosphoinositide phosphatase f... Potri.006G136400
[exp]
15.49 0.7005
AT5G28850 Calcium-binding EF-hand family... Potri.019G019500
[exp]
15.87 0.6980
AT4G39820 Tetratricopeptide repeat (TPR)... Potri.005G079300
[exp]
18.89 0.6886
AT4G01280 MYB Homeodomain-like superfamily p... Potri.014G089300
[exp]
23.49 0.7429
AT5G64160 unknown protein Potri.001G206032
[exp]
26.92 0.7453

Potri.014G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.