Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02290 229 / 1e-68 unknown protein AT3G45830 145 / 4e-36 unknown protein AT5G13950 70 / 3e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184000 [exp] 982 / 0 AT1G02290 231 / 2e-69 unknown protein Potri.009G026100 [exp] 150 / 1e-37 AT3G45830 1059 / 0.0 unknown protein Potri.001G233800 [exp] 149 / 2e-37 AT3G45830 1075 / 0.0 unknown protein Potri.014G144100 [exp] 64 / 3e-10 AT5G13950 406 / 4e-127 unknown protein Potri.002G237800 [exp] 63 / 4e-10 AT5G13950 556 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028606 [exp] 380 / 1e-125 AT1G02290 206 / 7e-61 unknown protein Lus10018907 [exp] 374 / 2e-123 AT1G02290 210 / 3e-62 unknown protein Lus10018121 [exp] 141 / 1e-34 AT3G45830 803 / 0.0 unknown protein Lus10036145 [exp] 139 / 6e-34 AT3G45830 1034 / 0.0 unknown protein Lus10031980 [exp] 64 / 3e-10 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 52 / 2e-06 AT5G13950 292 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G109600.6 pacid=42764192 polypeptide=Potri.014G109600.6.p locus=Potri.014G109600 ID=Potri.014G109600.6.v4.1 annot-version=v4.1 ATGGGCATACAGAAGATTTGCCATCGGAGTTCAAGTTCTGATAAAGTTTCTTGTGTCTTCAACGGTGAAGTCAAGCTGATGAGAGATAACCCAGTCCTGG GAGCAGACTCAGGGAATGATTCAGATGATTGTGAACTTGCTGAATTGAACTGTGAGCTTGGCATGGTGGAAGGCCAGTGGTGCTGCATACCATATGAGCT CTATGATCTTCCAGATTTGAGGGAAATATTATCTCTAGACACATGGAATTTGTGTTTAACAGAGGAAGAAAGGTTCCATCTGTCAGCTTACCTTCCAGAC ATGGACCAAGAGACGTTTTGCTTGACTATGAAGGAACTTTTTGATGGTAGTGAAATATATTTCGGGAATCCTTTGGATAAATTCTTCAAAAAATTGAAAG CTGGATTCTACCCTCCAAAGGTGGCTTGCTTCAGAGAAGGCTTGCAGTTTTTACAAAGGAAGCAATATTATCATTCGCTTAGAGCTTACCATGACAGGAT GATACAAAAGTTTATAGACATGAGAAGGTTATGGGATCAGCGTGAAATGAGTCCTGGTATTGAGGAAAATATTTTCACTTGGAAAAACAGGAGAAAACAA AAGAGCATCAACATGCTTGATCTAAATGAATCTCCTGATGACAATCATCTGTTAAGTGAGAAGGTCAACTTGGAATTGAAGGCAACGAAGCTAGTGGAGA GTGAGAATTCAGCAAAGGACAGGCCACCCTTTCTGTCTGCCAACAGGCCAAAATTTGCAGCTCCATACTGCAGACCAAAGGGGGTTCTAAAGAGGAAGGC ATCCGGCAATGATTCATTCCATAATTACAATTCAAAGGTGGTTGTGGCTGACTTCTCAGAACACTATCGATCATTGCCCAAAGGACTGTTGAAAATAGTA CCTAAAGTTCCTTCAGTTCACCTGGAACAATCAGACATTGTGCCAACAGGAGTGCAATCAAACTTTCCTTCTGGGACTCATGGCATACGGGATTTTAAGT TTTCTCCTTTACCAGCTTCTCTATGCTTTCAGAATGCAGGTAGCCTGCATGAATATCCATTTCTAAGGCAAAAGGCTGATGGTAGCAGGGTTTATTCTCC TCTGGACCAACCTCAGTTTCTCATGGATCCACAGGAAAGTGTTAGAGTAACCAGTAATCACCCGGAAAGCTTTACAAGAAAAGTGAAACTGGAAACACCT TCATCTTTAGATGACAATTCTGTTTTAGGAAAACACAAATTGTTTGGAGTTGATATGGGAAGGTTTCTGAATAAGGAATGCCAGTCATCCTTGGATACAG TGGGTGCAATGCCGTATGCCTTTGGTAGTGAAAATCCGAGGGCAAATGTGGGCAGAGAATTTAATGGCTCTTCCCTGAGATCCTTGGAATCATTCCCATT TCGTATCCAATATCAGGGAGGGGAGCAGCACATGACACCCTTAAAAGAAGAGCATCTCACTATCCATCCAAGAATTCCAGAAGTGGTTCCCACAATTTCA GATGTTGGCAATGGTAAGCAAGAAACGTTAATGGGTTCTTCTTCACACCAAAAGAATGGTGAGAGTGATGTCAGCATCAGAAAATCGGAGAAGCTATCGA GTAAATCCAGTGTCTCGGAGGCATTTAAGGATAAAAAGTTACTGCCATTGACGTACAAGCGAAGGAAAGTTGTAACTAAGGCCAACTCATTAAACTTTGG CAAGTCACTAACAGCAGCTGCTGATTTGAAGTCTGCAATTCCAAAAGAATCAAATCAAGATTTTAGGGAAGGTGTGAAAACTGTGAAGATAAAATTAATG GGACTGAAAGATATGCCCTTGGACAAGGAACCTGAAACAACACTTCATGGACTAAAGTAG
AA sequence Show only first row Show all	>Potri.014G109600.6 pacid=42764192 polypeptide=Potri.014G109600.6.p locus=Potri.014G109600 ID=Potri.014G109600.6.v4.1 annot-version=v4.1 MGIQKICHRSSSSDKVSCVFNGEVKLMRDNPVLGADSGNDSDDCELAELNCELGMVEGQWCCIPYELYDLPDLREILSLDTWNLCLTEEERFHLSAYLPD MDQETFCLTMKELFDGSEIYFGNPLDKFFKKLKAGFYPPKVACFREGLQFLQRKQYYHSLRAYHDRMIQKFIDMRRLWDQREMSPGIEENIFTWKNRRKQ KSINMLDLNESPDDNHLLSEKVNLELKATKLVESENSAKDRPPFLSANRPKFAAPYCRPKGVLKRKASGNDSFHNYNSKVVVADFSEHYRSLPKGLLKIV PKVPSVHLEQSDIVPTGVQSNFPSGTHGIRDFKFSPLPASLCFQNAGSLHEYPFLRQKADGSRVYSPLDQPQFLMDPQESVRVTSNHPESFTRKVKLETP SSLDDNSVLGKHKLFGVDMGRFLNKECQSSLDTVGAMPYAFGSENPRANVGREFNGSSLRSLESFPFRIQYQGGEQHMTPLKEEHLTIHPRIPEVVPTIS DVGNGKQETLMGSSSHQKNGESDVSIRKSEKLSSKSSVSEAFKDKKLLPLTYKRRKVVTKANSLNFGKSLTAAADLKSAIPKESNQDFREGVKTVKIKLM GLKDMPLDKEPETTLHGLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02290			unknown protein		Potri.014G109600 [exp]	0	1
AT3G60680			Plant protein of unknown funct...		Potri.002G145000 [exp]	2.64	0.7232
					Potri.003G183150 [exp]	4.69	0.7630
AT4G10270			Wound-responsive family protei...		Potri.019G117100 [exp]	6.70	0.7450
AT4G10270			Wound-responsive family protei...		Potri.019G116932 [exp]	6.92	0.7269
AT5G45470			Protein of unknown function (D...		Potri.014G030400 [exp]	12.04	0.7334
					Potri.013G094050 [exp]	14.42	0.7194
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Potri.018G132200 [exp]	15.09	0.7070	Pt-HKT1.2
					Potri.006G120901 [exp]	15.49	0.7450
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	24.33	0.6927
					Potri.008G062950 [exp]	27.11	0.7013

Compare expression of checked genes

Potri.014G109600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.