Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02305 515 / 0 Cysteine proteinases superfamily protein (.1) AT4G01610 512 / 0 Cysteine proteinases superfamily protein (.1.2) AT1G02300 489 / 3e-174 Cysteine proteinases superfamily protein (.1) AT3G45310 117 / 1e-29 Cysteine proteinases superfamily protein (.1.2) AT5G60360 112 / 8e-28 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G19400 109 / 7e-27 Cysteine proteinases superfamily protein (.1.2) AT3G43960 105 / 3e-25 Cysteine proteinases superfamily protein (.1) AT1G29080 100 / 7e-24 Papain family cysteine protease (.1) AT4G39090 99 / 4e-23 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT2G34080 98 / 6e-23 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184201 [exp] 669 / 0 AT1G02305 500 / 9e-179 Cysteine proteinases superfamily protein (.1) Potri.002G184300 [exp] 593 / 0 AT1G02305 550 / 0.0 Cysteine proteinases superfamily protein (.1) Potri.006G141700 [exp] 117 / 1e-29 AT3G45310 590 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.004G055900 [exp] 107 / 2e-26 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 107 / 3e-26 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056500 [exp] 107 / 3e-26 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 106 / 8e-26 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.008G183100 [exp] 106 / 9e-26 AT5G50260 489 / 2e-174 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.004G056366 [exp] 105 / 9e-26 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007212 [exp] 545 / 0 AT1G02305 532 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10010091 [exp] 529 / 0 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10042693 [exp] 112 / 3e-28 AT5G45890 379 / 1e-131 senescence-associated gene 12 (.1) Lus10029658 [exp] 111 / 1e-27 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10042691 [exp] 106 / 1e-26 AT5G50260 321 / 5e-110 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10033428 [exp] 108 / 2e-26 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10029649 [exp] 102 / 3e-24 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10015286 [exp] 99 / 5e-23 AT5G45890 393 / 7e-137 senescence-associated gene 12 (.1) Lus10015285 [exp] 96 / 4e-22 AT5G45890 406 / 8e-143 senescence-associated gene 12 (.1) Lus10002184 [exp] 96 / 4e-22 AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08127 [poplar] [flax] Propeptide_C1 Peptidase family C1 propeptide
Representative CDS sequence Show only first row Show all	>Potri.014G109801.2 pacid=42764025 polypeptide=Potri.014G109801.2.p locus=Potri.014G109801 ID=Potri.014G109801.2.v4.1 annot-version=v4.1 ATGGCAAATCCTTTGTATTTTCCCACTCTTCTCTTACTCCTTGCTGCTATCTCTCAGGCTACTGCGGAGGAACCAGTCTCCAAGCTCAAACTCAACTCTA GGATCCTTCAGGATTCAATAGTTCAAAAGGTCAATGAAAATCCCAAAGCTGGATGGGAAGCTACAATGAACCCTCAATTTTCCAATTATTCTGTTGGAGA ATTTAAGTACCTTCTTGGAGTCAAACAAACACCCAGAAAGGAACTAAGAGGCGTTCCTCTTTTAAGGCATCCAAAATCCATGAAATTGCCAATAGAATTT GATGCGAGAACTGCTTGGCCACATTGTAGCACCATCGGAAGAATTCTAGATCAGGGTCACTGTGGATCCTGTTGGGCATTTGGTGCTGTTGAATCACTAT CTGATCGTTTTTGCATCCATTATGGCATGAACCTCTCTCTATCTGTCAATGATCTCTTAGCTTGCTGTGGCTGGATGTGCGGCGCTGGTTGCGATGGTGG TAGTCCAATTGATGCATGGAGATACTTTGTCCAATCTGGTGTTGTCACTGAGGAGTGTGATCCATACTTTGATGATATTGGCTGTTCTCACCCTGGTTGC GAACCAGGATTTCCTACTCCAAAGTGTGAGAGAAAGTGTGCTGATAAGAACAAACTCTGGGCGGAGTCAAAGCACTTCAGTGTTAATGCATATAGAATCG ATTCTGACCCCCACAGTATTATGGCAGAAGTTTCTAGCAACGGACCAGTAGAGGTTGCCTTCACTGTTTATGAGGATTTTGCTCATTATAAATCAGGAGT TTACAAGCACATAACAGGTGATGCCATGGGAGGCCATGCTGTTAAGCTTATTGGGTGGGGGACTTCTGAAGATGGGGAGGATTATTGGCTTCTTGCTAAT CAGTGGAATAGAGGCTGGGGTGATGATGGTTACTTTAAGATTAAAAGAGGAACAAATGAGTGCGGCATTGAAGGGGCTGTTGTTGCTGGTTTGCCTTCCA CCAGGAACCTCGTTAGAGAAGTTGCCAGCATCGATGGCCATGAGCACGCTACGGCTTGA
AA sequence Show only first row Show all	>Potri.014G109801.2 pacid=42764025 polypeptide=Potri.014G109801.2.p locus=Potri.014G109801 ID=Potri.014G109801.2.v4.1 annot-version=v4.1 MANPLYFPTLLLLLAAISQATAEEPVSKLKLNSRILQDSIVQKVNENPKAGWEATMNPQFSNYSVGEFKYLLGVKQTPRKELRGVPLLRHPKSMKLPIEF DARTAWPHCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHYGMNLSLSVNDLLACCGWMCGAGCDGGSPIDAWRYFVQSGVVTEECDPYFDDIGCSHPGC EPGFPTPKCERKCADKNKLWAESKHFSVNAYRIDSDPHSIMAEVSSNGPVEVAFTVYEDFAHYKSGVYKHITGDAMGGHAVKLIGWGTSEDGEDYWLLAN QWNRGWGDDGYFKIKRGTNECGIEGAVVAGLPSTRNLVREVASIDGHEHATA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02305			Cysteine proteinases superfami...		Potri.014G109801 [exp]	0	1
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	4.89	0.8044
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	6.08	0.8450
AT2G40280			S-adenosyl-L-methionine-depend...		Potri.010G185000 [exp]	14.35	0.8348
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.009G062100 [exp]	17.66	0.7138
AT4G01575			serine protease inhibitor, Kaz...		Potri.015G001800 [exp]	17.91	0.8205
AT5G44670			Domain of unknown function (DU...		Potri.003G156600 [exp]	18.22	0.8188
AT3G24160		PMP	putative type 1 membrane prote...		Potri.003G178400 [exp]	19.79	0.8038	Pt-PMP.2
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	21.33	0.8126
AT5G43150			unknown protein		Potri.010G088200 [exp]	21.67	0.8180
					Potri.013G151333 [exp]	24.59	0.8052

Compare expression of checked genes

Potri.014G109801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.