Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62010 2006 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184400 [exp] 2362 / 0 AT3G62010 1966 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038011 [exp] 2126 / 0 AT3G62010 1976 / 0.0 unknown protein Lus10009251 [exp] 2117 / 0 AT3G62010 1969 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF14566 [poplar] [flax] PTPlike_phytase Inositol hexakisphosphate
Representative CDS sequence Show only first row Show all	>Potri.014G109900.4 pacid=42763329 polypeptide=Potri.014G109900.4.p locus=Potri.014G109900 ID=Potri.014G109900.4.v4.1 annot-version=v4.1 ATGTCGAATGCGGTGGTAGAAAAAGAGCCAGAGCAGGTGATGAAACTGAGAGGTGGATCAGTACTGGGAAAGAAGACCATTCTTAAAAGCGACCATTTCC CTGGCTGTCAAAATAAGCGCTTAACTCCTCAAATCGACGGCGCTCCTAATTACCGTCAGGCGGATTCGTTACCTGTTCACGGTGTTGCGATTCCAACAAT CGAAGGATGTCGTAATGTTATTAAGCACATAAGAGGTCGGAAAGACGGGAAGCAAGCACAAGTTTTATGGTTTAACCTTCGTGAAGAACCGTTGGTGTAT ATTAATGGGCGTCCCTTTGTCCTGCGCGATGTGGAGAGGCCTTTCTCCAACCTTGAATATACGGGAATAAACAGGTCTAGGGTTGAAGAAATGGAGGCTC GGTTGAAAGAGGATATTCTGATGGAAGCTGCAAGATATGGAAATAAGATACTTGTTACAGATGAACTGCCAGATGGTCAGATGGTGGACCAATGGGAACC AGTGTCATGTGATTCTGTGAAGACACCACTTGAGGTGTATGAAGATTTGCAAGAAGAAGGATATCTGTATGATTACGAACGTGTTCCTGTAACAGATGAA AAGTCACCAGAGGAGCAGGATTTTGATACTTTAGTCGATAGAATTTATCAGACAGACTTGAATGCAGATATAATATTTAACTGTCAAATGGGGCGTGGAA GGACCACAACTGGTATGGTGATAGCAACTTTGGTATTCCTCAATCGGATTGGAGATTCTGGTATTCAGAGAACCAATTCAGTAGGGAGAATTTTTGACTT TGGTTTGAATGTCAATGAAAATTTGCCAAACTCAGAGGATGCGCTTCGCAGAGGAGAATATGCAGTCGTAAGAAGTTTGATCCGGGTTTTAGAGGGTGGT GTTGAAGGGAAAAAACAAGTGGATAAAGTCATTGACAAGTGTGCCTCCATGCAGAACTTACGGGAAGCAATTGCCAATTATCGCAATAGTATTCTTCGTC AACCTGATGAGATGAAGCGAGAGGCATCACTTTCATTTTTTGTGGAATACTTGGAAAGATATTACTTCCTCATATGTTTTGCTGTGTATATTCACTCAGA GAGAGTTGCCCTCCGATCTAGTTCCTTTGTTCATAGCAGTTTTGCAGACTGGATGCGAGCACGACCAGAACTTTATAGCATTATTCGTAGGTTGCTCAGG AGAGACCCAATGGGTGCCCTTGGGTATGCGAGTCTGAAGCCATCTCTAATGAAGATTGCTGAATCTGCTGATGGCCGACCTCATGAGATGGATGTGGTTG CAGCCTTGAGAAACGGGGAGGTGCTCGGAAGTCAGACTGTTCTAAAAAGTGACCACTGTCCTGGCTGTCAAAACCCTGGTTTACCGGAGAGAGTGGATGG TGCACCTAATTTCAGAGAAGTTCCTGGCTTTCCAGTTTATGGAGTTGCAAATCCAACCATTGATGGTATTCTTTCTGTCATTCGAAGGATTGGCAGCTCT AAAGGAGGTCGCCCAGTTTTTTGGCATAATATGAGAGAAGAACCTGTCATCTACATAAATGGAAAGCCATTTGTGCTCCGCGAGGTTGAAAGACCATATA AAAACATGCTGGAATACTCGGGAATTGGTCGTGAGAGAGTGGAGAGGATGGAAGCTCGACTGAAAGAAGATATCTTGCGAGAAGCTGAACGCTATGGAGG TGCTATAATGGTCATTCATGAAACAAATGATGGCCAAATTTTTGATGCTTGGGAGCATGTAAATTCTGATTCTATTAAGACACCACTTGAGGTGTTCAAA GGCTTAGTTACTGATGGTTTTCCCATTAAGTATGCTCGTGTGCCAATCACTGATGGTAAAGCTCCTAAAAGTTCTGATTTTGACACATTGGCAATAAATA TTGCTTCTGCTTCCAAGGATACTGCTTTCGTTTTCAATTGCCAGATGGGAAGGGGAAGGACTACGACTGGCACTGTAATTGCTTGCCTTCTGAAACTTAG AATAGATTATGGGAGACCAATTAGAGTCTTAGCTGATGATATGACCCATGAAGAAATGGAAAGCGGAAGCTCAAGTGGTGAAGAAACTGGAGGTGACCCT GCTGCATCCACCTCTGACATTGCCAGTGTAAAAACTGATATGGAGCAAGGTCGTGCTTTTGGCATTGATGATATCCTGCTGCTGTGGAAGATAACAAGAT TATTTGATAATGGTATGGAATGCCGAGAAGCATTAGATGCTATTATTGATAGATGTTCTGCTTTGCAGAACATACGCCAAGCTGTTCTGCAATACAGAAA GATGGTCAATCAACAACATGTTGAGCCAAGAGTCAGGAGAGTGGCATTGAGCCGTGGTGCTGAATACTTGGAGCGTTACTTCCGTTTAATTGCTTTTGCA GCATATCTAGGAAGTGAAGCATTTGATGGATTTTGTGGACAAGGAGAATCAAGAATGGCATTTAAGAGTTGGTTGCATCAAAGATCTGAAGTCCAAGCAA TGAAATGGAGCATTCGATTAAAGCCAGGGCGTTTTTTCACTGTCCCACAGGAGGAGTTGAGAACACCACAGGAATCTCAGCATGGAGATGCAGTAATGGA AGCCACTGTCAGGGTCCGAAATGGTTCGGTTTTGGGTAAAGGTTCTATCCTCAAAATGTATTTCTTTCCTGGTCAGAGGACTTCCAGTCACATACAAATT CAAGGAGCACCTCATGTTTACAAGGTGGATGGATATCCTGTGTATAGCATGGCAACACCAACGATTACTGGTGCCAAAGAGATGCTTGCGTATTTGAGTG CCAAGCCCAAGATAGAAGGATCTCTGACACGGAAAGTGATATTGACTGATCTCAGAGAAGAAGCAGTTGTTTACATCAATGGCACACCATATGTGCTCAG GGAGCTAAATAAACCTGTTGATGTTCTCAAGCATGTTGGAATTACTGGTCCAGTGGTAGAACTCATGGAGGCCCGACTAAAAGAAGATATAGTATCCGAG ATTAGACAGTCTGGTGGTCGAATACTTTTACATCGTGAAGAATATAATCCAGCAACAAATCAGTCCTGTGTCATAGGATATTGGGAGAACATCTCTGTAG ATGATGTGAAGACACCAGCTGAAGTGTACGCTGCTCTAAAGGATGAGGGTTATGATATAACATATAGGAGGATTCCATTAACTAGAGAGAGGGAGGCTCT AACTTCTGATGTTGATGCAATACAGTATTGTAAAGAAGACTGTGAGGGGAGCTACCTTTTTGTTTCACACACAGGCTTTGGAGGTGTTGGCTATGCAATG GCAATTATTTGTATCAGACTTGACGCGGAAGCAAAGTTCACATCAAAGATTTCACAAACAGTGGTTGGTAGACGTTCATTGTCTATTTTGTCTGAAGCTA ACTTACCTTCTGAGTTGTCTGATGAAGAAGCACTGAGGATGGGCGATTACCGTGACATACTTAGTCTTACAAGAGTTCTCGCACATGGTCCAAAGAGCAA AGCAGATGTAGACATTGTTATTGAAAAGTGTGCAGGTGCAGGGCATTTGCGTGATGATATTCTTTATTACAACAAGGAACTTCGGAAGTCTCCTGGTGAT GATGATGAGCAACGTGCATACCTCATGGATATGGGCATCAAGGCATTAAGGAGGTACTTTTTTCTAATCACATTCAGATCATACCTCTACTCCACGAAGG CGAGTGAAACGAAATTCACATCATGGATGGATTCAAGGCCTGAACTAAGACATCTATGTAATAATCTCAGGATGGATAAATAA
AA sequence Show only first row Show all	>Potri.014G109900.4 pacid=42763329 polypeptide=Potri.014G109900.4.p locus=Potri.014G109900 ID=Potri.014G109900.4.v4.1 annot-version=v4.1 MSNAVVEKEPEQVMKLRGGSVLGKKTILKSDHFPGCQNKRLTPQIDGAPNYRQADSLPVHGVAIPTIEGCRNVIKHIRGRKDGKQAQVLWFNLREEPLVY INGRPFVLRDVERPFSNLEYTGINRSRVEEMEARLKEDILMEAARYGNKILVTDELPDGQMVDQWEPVSCDSVKTPLEVYEDLQEEGYLYDYERVPVTDE KSPEEQDFDTLVDRIYQTDLNADIIFNCQMGRGRTTTGMVIATLVFLNRIGDSGIQRTNSVGRIFDFGLNVNENLPNSEDALRRGEYAVVRSLIRVLEGG VEGKKQVDKVIDKCASMQNLREAIANYRNSILRQPDEMKREASLSFFVEYLERYYFLICFAVYIHSERVALRSSSFVHSSFADWMRARPELYSIIRRLLR RDPMGALGYASLKPSLMKIAESADGRPHEMDVVAALRNGEVLGSQTVLKSDHCPGCQNPGLPERVDGAPNFREVPGFPVYGVANPTIDGILSVIRRIGSS KGGRPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYSGIGRERVERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVNSDSIKTPLEVFK GLVTDGFPIKYARVPITDGKAPKSSDFDTLAINIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPIRVLADDMTHEEMESGSSSGEETGGDP AASTSDIASVKTDMEQGRAFGIDDILLLWKITRLFDNGMECREALDAIIDRCSALQNIRQAVLQYRKMVNQQHVEPRVRRVALSRGAEYLERYFRLIAFA AYLGSEAFDGFCGQGESRMAFKSWLHQRSEVQAMKWSIRLKPGRFFTVPQEELRTPQESQHGDAVMEATVRVRNGSVLGKGSILKMYFFPGQRTSSHIQI QGAPHVYKVDGYPVYSMATPTITGAKEMLAYLSAKPKIEGSLTRKVILTDLREEAVVYINGTPYVLRELNKPVDVLKHVGITGPVVELMEARLKEDIVSE IRQSGGRILLHREEYNPATNQSCVIGYWENISVDDVKTPAEVYAALKDEGYDITYRRIPLTREREALTSDVDAIQYCKEDCEGSYLFVSHTGFGGVGYAM AIICIRLDAEAKFTSKISQTVVGRRSLSILSEANLPSELSDEEALRMGDYRDILSLTRVLAHGPKSKADVDIVIEKCAGAGHLRDDILYYNKELRKSPGD DDEQRAYLMDMGIKALRRYFFLITFRSYLYSTKASETKFTSWMDSRPELRHLCNNLRMDK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62010			unknown protein		Potri.014G109900 [exp]	0	1
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047300 [exp]	2.00	0.8429
AT1G61215		BRD4	bromodomain 4 (.1)		Potri.004G036900 [exp]	2.64	0.8040
AT5G03230			Protein of unknown function, D...		Potri.006G127900 [exp]	4.24	0.8341
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	7.41	0.8180
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	12.12	0.8306
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.010G250800 [exp]	16.24	0.7565	ACA9.1
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.011G070900 [exp]	16.58	0.7733	Pt-TPS7.1
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	17.32	0.7954
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	17.43	0.8001
AT1G30320			Remorin family protein (.1)		Potri.001G358600 [exp]	18.33	0.8197

Compare expression of checked genes

Potri.014G109900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.