Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27680 737 / 0 APL2 ADPGLC-PPase large subunit (.1) AT5G19220 701 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT4G39210 699 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 686 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT5G48300 508 / 6e-177 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 330 / 5e-108 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT2G39770 43 / 0.0004 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229700 [exp] 771 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.002G033400 [exp] 766 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 719 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.009G118800 [exp] 717 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.008G195100 [exp] 694 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G171800 [exp] 507 / 3e-176 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.007G146100 [exp] 356 / 8e-118 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.017G001700 [exp] 356 / 4e-117 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007209 [exp] 821 / 0 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010088 [exp] 806 / 0 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10034053 [exp] 705 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 689 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10023553 [exp] 675 / 0 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10040437 [exp] 640 / 0 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10016069 [exp] 508 / 1e-176 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10025187 [exp] 507 / 4e-176 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 315 / 1e-101 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 270 / 8e-85 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.014G110000.3 pacid=42762904 polypeptide=Potri.014G110000.3.p locus=Potri.014G110000 ID=Potri.014G110000.3.v4.1 annot-version=v4.1 ATGGTAGTGGGAGAGCTGCATGGATTTATGCCAGTATCCTCCAAGATGAAATCGTCTACACGTGACATATTTCTGTCATCACCATTTGTTGGGCGTAAAC TGGGCAATGGAGGACATGCATATACCTCAATTTCGGGTGTTCAGCTATCAAAATTCAACTTCCCTAGGAAAACATGGAACACTAGTAGACGGCACTCAAC TACTACTGCAGTTCTAGCCGATTTTACAAAAGACTTTATGACTTTTCAGGCATCAATGTTTGAGAAACAAGCAGCAGACCCTAAGACTGTTGCTGCTATC ATATTAGGTGGTGGAGCTGGAACAAGACTCTTCCCTCTTACTCGAAGAAGGGCTAAACCAGCTGTACCAATTGGGGGATGTTACAGATTGATTGATGTTC CAATGAGTAATTGCATCAACAGTGGAATTAACAAAATTTACATCCTCACCCAGTTCAATTCTCAATCCCTTAACCGTCACATTGCTCGAACATATAATCA GGGAAATGGTGTAGACTTTGGCGATGGATTTGTTGAGGTATTGGCAGCTACCCAGACACCTGGTGAATCTGGTAAGAAGTGGTTTCAGGGTACAGCAGAT GCTGTAAGACAATTTATTTGGTTGTTTGAGGATGCGAAGCTTAGAAACATTGAGAACATTCTGGTATTATCTGGTGATCATCTTTATCGAATGGATTACA TGGACTTTTTGCAGAAGCATATTGAATCGGGTGCTGACATTTGTGTCTCTTGTCTTCCCGTGAATGACAGTCGTGCATCTGATTTTGGGTTGGTAAAGAT TGATGAAACAGGACAGATAAGACAATTTCTTGAGAAGCCTAAGGGTGAAAATTTGAAATCTATGAAAGTGGATACAACTGTTTTAGGATTATCAGCTCAA GAAGCAAATAAATTTCCATACATTGCATCGATGGGTATATATATGTTCAAGACAGATGTACTGCTAAAACTTCTCAGGTGGAATTATCCAACAGCCAATG ATTTTGGATCAGAAATTATTCCAATGTCTACAAAGGAGTATAATGTTCAGGCATATCTATTCAATGGATACTGGGAGGATATTGGAACTATAAAATCTTT CTTTGATGCCAACTTGGCCCTAACGGATCAGCCTCCCAATTTTCACTTCTTTGATCCTCTGAAGCCAATCTTCACTTCTCCCCGATTTCTGCCACCAACT AAAATCGAGAAGTGCCGGGTCAAGGATTCCATAGTTTCGCATGGTTGCTTTTTAAGGGAGTGTAGTGTTGAACGTTCCATTGTCGGCGTTCGCTCTAGAC TGGAATACGGGGTTGAGCTGAAGGATACCATGATGATTGGTGCTGATTATTATCAAACAGAGGCCGAAATAGCAGCCTCTTTAGCAGAAGGAAGAGTTCC AGTAGGTGTTGGGAAAGATACCAAAATCATGAATTGTATAATCGACAAGAACGCCAGAATTGGAAAGAATGTGATCATAGCAAACAAAGAAGGTGTGCAA GAGGCAGAGAGACCATCCGAGGGATTCTATATCAGATCAGGAATAACTGTGGTGTTAAAAAACTCTGTAATAAAGGATGGAACGATCATATAG
AA sequence Show only first row Show all	>Potri.014G110000.3 pacid=42762904 polypeptide=Potri.014G110000.3.p locus=Potri.014G110000 ID=Potri.014G110000.3.v4.1 annot-version=v4.1 MVVGELHGFMPVSSKMKSSTRDIFLSSPFVGRKLGNGGHAYTSISGVQLSKFNFPRKTWNTSRRHSTTTAVLADFTKDFMTFQASMFEKQAADPKTVAAI ILGGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIYILTQFNSQSLNRHIARTYNQGNGVDFGDGFVEVLAATQTPGESGKKWFQGTAD AVRQFIWLFEDAKLRNIENILVLSGDHLYRMDYMDFLQKHIESGADICVSCLPVNDSRASDFGLVKIDETGQIRQFLEKPKGENLKSMKVDTTVLGLSAQ EANKFPYIASMGIYMFKTDVLLKLLRWNYPTANDFGSEIIPMSTKEYNVQAYLFNGYWEDIGTIKSFFDANLALTDQPPNFHFFDPLKPIFTSPRFLPPT KIEKCRVKDSIVSHGCFLRECSVERSIVGVRSRLEYGVELKDTMMIGADYYQTEAEIAASLAEGRVPVGVGKDTKIMNCIIDKNARIGKNVIIANKEGVQ EAERPSEGFYIRSGITVVLKNSVIKDGTII

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.014G110000 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036200 [exp]	2.00	0.9441
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013800 [exp]	2.44	0.9373
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	4.00	0.9386
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	6.32	0.9328	Pt-SYNC2.1
AT1G30080			Glycosyl hydrolase superfamily...		Potri.004G132700 [exp]	6.32	0.9236
AT1G75260			oxidoreductases, acting on NAD...		Potri.002G034700 [exp]	8.48	0.9257
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036500 [exp]	9.48	0.9214
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.018G015800 [exp]	9.79	0.9048
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.005G203500 [exp]	10.24	0.9067	ATGSL11.1
AT5G37180		ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE S...		Potri.017G139100 [exp]	12.64	0.9292

Compare expression of checked genes

Potri.014G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.