Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02330 360 / 4e-126 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042403 [exp] 348 / 2e-121 AT1G02330 357 / 1e-124 unknown protein Lus10026267 [exp] 348 / 3e-121 AT1G02330 358 / 5e-125 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07052 [poplar] [flax] Hep_59 Hepatocellular carcinoma-associated antigen 59
Representative CDS sequence Show only first row Show all	>Potri.014G110200.1 pacid=42763919 polypeptide=Potri.014G110200.1.p locus=Potri.014G110200 ID=Potri.014G110200.1.v4.1 annot-version=v4.1 ATGATGCAGAAGAAGAGAAATTTCAGGAAGAGGACTTTCGAAGAAGATGAGCATAGCAAAGCATCAGACGACGACGAACAAGAAAGAAGATTGGCATTAG AAGAGGTGAAGTTCCTGCAGAAACAGAGGGAGAGGAAGTCAGGAATCCCTGCATTAGCAACAACTTCGCAAACTGCAACTACAGTAGCTGCCAAATTAAC CGAAAAGGCCGATGGAGATGGCGAAAAAGAAGAGCTTGTTCTTCAAGACACTTTTGCTCAAGAAACTGCTGTCATGGTCGAAGATCCCAACATGTTGCAG TATGTTGAGCAAGAATTGGCCAAGAAAAGAGGGAAGAATATTGATGCAACTGATCAAGTTGAGACGGAGTTGAAGCGTGCTGAAGATGAATTATACAAAA TTCCGGAGCATCTTAAAGTGAAAAAGCGAAACTCAGAAGAAAGCTCTACTCAGTGGACAACTGGGATTGCGGAGGTTCAGCTACCCATTGAATACAAACT GAGAAATATTGAGGAAACAGAGGCAGCCAAAAAGCTTCTACAGGAGAAAAGGCTGATGGGTAGACCAAAATCAGAATTTAGCATCCCTTCCAGTTACAGT GCTGATTATTTCCAACGCGGCAGGGATTATGCTGAGAAACTTCGACGAGATCATCCTGAGCTGTACAAGGACAGGAGTTTGCAGGATGATGCTGTTGCTG GATCCAAACCAGCTGATAACAGCACTGATGCAGCTGGACGGAGGCAAGCTGCAACGGATGAGTTCATGCTAGAGCGCTTCCGAAAACGAGAACGTCATCG GGTCATGCGTAGATAG
AA sequence Show only first row Show all	>Potri.014G110200.1 pacid=42763919 polypeptide=Potri.014G110200.1.p locus=Potri.014G110200 ID=Potri.014G110200.1.v4.1 annot-version=v4.1 MMQKKRNFRKRTFEEDEHSKASDDDEQERRLALEEVKFLQKQRERKSGIPALATTSQTATTVAAKLTEKADGDGEKEELVLQDTFAQETAVMVEDPNMLQ YVEQELAKKRGKNIDATDQVETELKRAEDELYKIPEHLKVKKRNSEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKLLQEKRLMGRPKSEFSIPSSYS ADYFQRGRDYAEKLRRDHPELYKDRSLQDDAVAGSKPADNSTDAAGRRQAATDEFMLERFRKRERHRVMRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02330			unknown protein		Potri.014G110200 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211800 [exp]	1.00	0.8446
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.012G100800 [exp]	2.82	0.8002
AT5G40510			Sucrase/ferredoxin-like family...		Potri.001G344400 [exp]	4.89	0.8280
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	12.44	0.7963
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	12.48	0.7733
AT4G28070			AFG1-like ATPase family protei...		Potri.018G100900 [exp]	18.02	0.7714
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	18.38	0.7574
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.012G019300 [exp]	18.57	0.8039
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.014G100800 [exp]	31.93	0.7667	MYB201
AT3G19990			unknown protein		Potri.007G001200 [exp]	32.86	0.7594

Compare expression of checked genes

Potri.014G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.