Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-POL.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46920 1092 / 0 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 372 / 6e-116 PLL1 poltergeist like 1 (.1) AT1G07630 351 / 4e-109 PLL5 pol-like 5 (.1) AT3G09400 339 / 7e-105 PLL3 pol-like 3 (.1.2) AT5G02400 339 / 1e-104 PLL2 pol-like 2 (.1) AT2G28890 332 / 4e-102 PLL4 poltergeist like 4 (.1) AT3G16560 172 / 1e-45 Protein phosphatase 2C family protein (.1) AT4G38520 122 / 9e-30 Protein phosphatase 2C family protein (.1.2) AT3G12620 121 / 2e-29 Protein phosphatase 2C family protein (.1.2) AT4G33920 119 / 1e-28 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185000 [exp] 1631 / 0 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G089500 [exp] 383 / 7e-120 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 378 / 6e-118 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.009G030600 [exp] 357 / 9e-111 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 356 / 3e-110 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.006G085000 [exp] 331 / 2e-101 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.010G024800 [exp] 196 / 7e-54 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 188 / 3e-51 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.003G159600 [exp] 172 / 9e-46 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000896 [exp] 478 / 1e-156 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004554 [exp] 362 / 2e-111 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10040823 [exp] 350 / 8e-108 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 349 / 2e-107 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 342 / 4e-106 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 339 / 4e-105 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10004793 [exp] 213 / 8e-60 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 208 / 3e-58 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10040346 [exp] 128 / 9e-32 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 126 / 6e-31 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.014G110500.1 pacid=42764342 polypeptide=Potri.014G110500.1.p locus=Potri.014G110500 ID=Potri.014G110500.1.v4.1 annot-version=v4.1 ATGGGTAACGGCACTTCTCGTGTCGTGGGTTGTTTTGCTTTTAATGGCAAGAATGGTGTTGATTTAGAGTTTTTAGAGCCATTGGATGAAGGGTTAGGCC ATTCATTTTGCTATGTTAGGCCACCTATTTTTGACTCCCCTGCCATTACCCCCTCAAACTCTGAGAGGTTTACAGTTGATTCCAGTACTCTAGATTCTGA AACATTAAGCGGTTCTTTTAGACATGATATCATAGATGATCCCTCGGGTTTGCATAGACAAAACAAGACTTTCCCTGAAACTACATTTAAAACAATATCC GGAGCATCAGTTAGTGCCAATGTTTCAACTGCTAGGAGTAACCAGAGTGCATTGTTTGCTGGTGAAATGCAAGAGCCAGCTGCTTCATTCGAGAGCACCT CATCTTTTTCTGCAATTCCTCTGCAGCCAGTGCCTCGTGGCTCTGGACCTTTGAATGGCTTTATGTCCGGTCCTCTTGAGAGAGGATTCGCTTCAGGTCC TTTAGATAAGGGTGGTGGTTTTATGTCTGGACCTATCGAGAAGGGGGTAATGTCAGGTCCTCTTGATGTCACTGACAAATCCAACTTCTCTGCTCCACTT GCACGTGGTCGTCGAAGACCCCGCTTTCAGCGTTTAGTGAGGAGTGTGAGTGGACCTATGAAAAACACTCTATCACGAACATTATCAAGACATTTGATGG GTTCAGGTTGGATGCAGAGGTTTGTTTTGCACCCGGTAACCCAATTGGCTTGGCAGGTTAGGGAGCCAAAGTTTCGGCCAGAAGCCTCAAGGAACTGTCT TGAAGGAGGGCCATCAGAGAGCGAGTACGTGGACATTTGCAACTTACAATGGGCTCATGGCAAGGCTGGGGAAGACAGGGTTCATGTCGTACTTTGTGAT GAGCAGGGATGGCTGTTTATTGGGATATATGATGGCTTTAGTGGTCCAGATGCACCAGATTTTCTGATGAGCCATCTTCATAGAGCTATTGACAGGGAGT TAGAAGGACTGCTGTGGGATTATGAAGATAAATCTTCCAATGATCCAATAAAACCTAAACTGTCCAAGAGTGGACTTGCTGAGGCAGGTTCAGAGTGCAG CAAGCAAGAGCAGCCTAACTCGAGTCAAACAACCTCTTGCAGCTTAAACAACTTGTGTAGTCCTGGAGATGTTGGGGGCCAATCTTCTAATTGTGAGATT GTGGATGAAATTGATGTTAGGGGCTGTCAGCAGCAATCATCTAATTGTGAAAAGCCTAGCAGCTTGGGCCCTGCTTCTGCCTCTATTCCAACTGCCAACT TGACTGGCAAAGGAAGGAAAAGCGTTCGGCTTTACGAGCTGCTGCAGATGGAATCATGCGACGGTTCAGGTTCTGCATCATTCTCAGTGGTTAAAAGCCA AAGAAGCAGATCATGGAATTGTCAACCAAGCTCAGATGCTTTGGATTTTGATCAAACTTTGCGAAAAGAACCGTCGAGATCCTCCTCATTGGATAACTGC AAAGGAGAAGGTTTTAGTCATCGAGGTGAAGATCCCACGACATCTGGAGAAGATGGAGGGATTGGCCTTCAATCTGGTAATCAGGGAGGTGGAACTGATC TTTCTGTTTCTGTTCAAAGGCAGGGTACAAGAAAGTTTGTTATCAGCTCAAAGATCCGAAAAATGTATCGGAAGCAGAAGTCCTTGCGTAAGAAACTCTT TCCTTGGAGTTATGATTGGCATAGAGAGGAGACTTGTGCTGATGAGAGAGTGGTGGAACCCTCTGGACCTATTAGGAGATGGAAAACAGGAATTGTTGAC CACGATGCAGTTTTGAGAGCAATGGCTCGGGGACTTCAACACACTGAAGAGCAATATATGGAAATGGTGGAAAAGGACCTTGATAGAAATGCAGAGCTTG CTTTGATGGGATCATGTGTTCTAGTGATGTTAATGAAGGATCAAGATGTGTATGTCATGAACCTTGGGGATAGCCGTGCAATATTAGCACAAGAACGACC CAATGATCGTCATCCTAATCCAACTTTGGCGAAGGATGACATGAGGTATAAGAATAGATCCCGAGAGTTTCTAGTACGTATGGAGCTGGACAGAATCTCA GAGGAGTCTCCAATGCATAATCATAACAGTCAGGTTAATATGATCAACAAGAACAGAGAGATCTCTATTTGCAGATTGAAGATGAGGGCAGTTCAGCTTT CAACTGATCACAGCACGAGTATTGAAGAGGAAGTGCTTAGAATAAAGGCAGAACATCCTGATGACAACCAAGCGATTTTAAACGATCGAGTGAAGGGACA ATTGAAAGTAACCAGAGCTTTCGGTGCTGGATTTTTGAAGAAGCCATCTTGTAATGAAGCTCTGCTAGAGATTTTTCGGATCGCTTATGTGGGAACTAAT CCCTATGTGAGCTGCATTCCTTCTGTAGTTCACCACCGACTCTCCTCAAGCGATCGATTCTTAGTTCTCTCCTCTGATGGGCTTTACCAGTACTTCAGCA ATGAAGAGGTGGTTGCTCATGTCACATGGTTCATGGAAAATGTCCCTGAAGGTGATCCTGCACAGTATCTCATTGCAGAACTTCTCTTCCGTGCTGCCAA AAAGAATGGAATGGATTTTCATGAATTGCTTGATATTCCTCATGGGGACAGACGTAAATATCATGATGATGTCTCTGTTATGGTGGTTTCTCTAGAGGGA GGAGAAATTTGGAGATCCTCTGGATAA
AA sequence Show only first row Show all	>Potri.014G110500.1 pacid=42764342 polypeptide=Potri.014G110500.1.p locus=Potri.014G110500 ID=Potri.014G110500.1.v4.1 annot-version=v4.1 MGNGTSRVVGCFAFNGKNGVDLEFLEPLDEGLGHSFCYVRPPIFDSPAITPSNSERFTVDSSTLDSETLSGSFRHDIIDDPSGLHRQNKTFPETTFKTIS GASVSANVSTARSNQSALFAGEMQEPAASFESTSSFSAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDKGGGFMSGPIEKGVMSGPLDVTDKSNFSAPL ARGRRRPRFQRLVRSVSGPMKNTLSRTLSRHLMGSGWMQRFVLHPVTQLAWQVREPKFRPEASRNCLEGGPSESEYVDICNLQWAHGKAGEDRVHVVLCD EQGWLFIGIYDGFSGPDAPDFLMSHLHRAIDRELEGLLWDYEDKSSNDPIKPKLSKSGLAEAGSECSKQEQPNSSQTTSCSLNNLCSPGDVGGQSSNCEI VDEIDVRGCQQQSSNCEKPSSLGPASASIPTANLTGKGRKSVRLYELLQMESCDGSGSASFSVVKSQRSRSWNCQPSSDALDFDQTLRKEPSRSSSLDNC KGEGFSHRGEDPTTSGEDGGIGLQSGNQGGGTDLSVSVQRQGTRKFVISSKIRKMYRKQKSLRKKLFPWSYDWHREETCADERVVEPSGPIRRWKTGIVD HDAVLRAMARGLQHTEEQYMEMVEKDLDRNAELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPTLAKDDMRYKNRSREFLVRMELDRIS EESPMHNHNSQVNMINKNREISICRLKMRAVQLSTDHSTSIEEEVLRIKAEHPDDNQAILNDRVKGQLKVTRAFGAGFLKKPSCNEALLEIFRIAYVGTN PYVSCIPSVVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEG GEIWRSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.014G110500 [exp]	0	1	Pt-POL.1
AT4G17895		UBP20	ubiquitin-specific protease 20...		Potri.003G092400 [exp]	1.41	0.7784	Pt-UBP21.1
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	2.82	0.7750
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.012G105800 [exp]	4.12	0.7427	Pt-PHS1.1
AT1G19880			Regulator of chromosome conden...		Potri.005G236000 [exp]	13.45	0.7907
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.010G177400 [exp]	24.26	0.7235
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	28.10	0.7056	CHR932
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	33.94	0.6869
AT4G33400			Vacuolar import/degradation, V...		Potri.014G029600 [exp]	40.79	0.7287
AT5G52950			unknown protein		Potri.012G033800 [exp]	55.08	0.7045
					Potri.004G183401 [exp]	68.17	0.7041

Compare expression of checked genes

Potri.014G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.