Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62060 612 / 0 Pectinacetylesterase family protein (.1) AT2G46930 589 / 0 Pectinacetylesterase family protein (.1) AT5G26670 581 / 0 Pectinacetylesterase family protein (.1.2) AT3G05910 580 / 0 Pectinacetylesterase family protein (.1.2) AT1G57590 561 / 0 Pectinacetylesterase family protein (.1) AT4G19420 449 / 2e-156 Pectinacetylesterase family protein (.1.2) AT1G09550 444 / 1e-154 Pectinacetylesterase family protein (.1) AT5G23870 437 / 2e-151 Pectinacetylesterase family protein (.1.2.3) AT3G09410 425 / 1e-146 Pectinacetylesterase family protein (.1.3) AT3G09405 408 / 5e-140 Pectinacetylesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000900 [exp] 597 / 0 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 597 / 0 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 558 / 0 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 460 / 3e-160 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.004G234100 [exp] 436 / 6e-151 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 427 / 6e-148 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.015G145400 [exp] 423 / 3e-146 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.012G142300 [exp] 414 / 1e-142 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.003G046200 [exp] 407 / 7e-140 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038024 [exp] 627 / 0 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 625 / 0 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 588 / 0 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10010084 [exp] 497 / 1e-175 AT5G26670 491 / 9e-174 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 442 / 2e-153 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 440 / 1e-152 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10024398 [exp] 425 / 2e-146 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3) Lus10033301 [exp] 418 / 2e-144 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 416 / 4e-143 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10039238 [exp] 414 / 1e-142 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.014G110900.1 pacid=42763385 polypeptide=Potri.014G110900.1.p locus=Potri.014G110900 ID=Potri.014G110900.1.v4.1 annot-version=v4.1 ATGAAGCAGGTGCAAGTGTTGTCCCTGTTCGTGTTTACTTTAATTGGGAATGTTTTGAGCGGATCTAACCATGTTTTTCAAGATTTGAAAGATAGGCAAG GAGTCCTCTCCTTCCTTGAGTACTATGCGGCTGTCTCACCTTCTTCCTCTGTTACTGATAAACCTCTCATGGTCGGCCTCACTCTTATTCAGGGAGCTGA TTCCAGTGGAGCTGTCTGTTTGGATGGAACACTGCCCGGTTACCACTTGGATCGTGGGTCTGGAACGGGAAAAGATAGCTGGCTCGTTCAGTTAGAGGGA GGAGGGTGGTGCGATACCATTAGAAATTGTGTTTACCGCAAAACTACTCGTCGTGGTTCATCAAAACTTTTTGAAAAGCAATTACCTTTCACTGGAATAT TAAGTGATAAAGCAGAAGAAAATCCAGATTTCTTTAACTGGAACAGAGTAAAGGTACGTTATTGTGATGGCGCATCTTTTAGCGGGGACAGTCAGAATGA GGCTTCACAGCTTTATTTTCGAGGACAACGTATCTGGTCAGCTGCAATGGAATATTTAATGGCTGAAGGAATGCAAAATGCCACTCAGGCTCTTCTCTCT GGATGCTCTGCTGGGGGCTTGGCATCCATAATTCATTGTGATGAATTCAGGGAATTATTTCCACAGTCTACAAAAGTGAAATGCTTAAGTGATGCTGGAA TGTTTCTCAATGCAATGGATATATCAGGTGGGCACACCCTGCAAAACTTTTATAGTGGTGTAGTCAGCTTACAGGAAGTGCAAAAGAGTCTGCCAAGTAC TTGTATTGACCACCTAGATCCAACTTCGTGCTTCTTTCCCCAGAATTTGGTTGCTGCTGTAAGGACTCCACTATTTCTTCTCAATTCAGCCTATGATGTA TGGCAGCTGCGGTCCAGTTTAGCTCCACCATCAGCTGATCCTCATGGTACATGGAAAGAATGCAGACAAAATAATGCACAATGTAATTCATCACAGATCC AATTTTTGCAAGAATTCAGGAATCAAATGCTGGATGCCATAAAAGTCTTTTCATCATCCAATCAAAATGGTTTGTTCATAAATTCTTGTTTTGCTCATTG CCAATCTGAGAGACAAGATACATGGTTCGCTGATGATTCTCCACGTATAGGGAACAAGAGGATTGCACAATCTGTTGGAGACTGGTATTTTGATCGGGAA GATGTTAAAGCTGTTGACTGTCCATACCCCTGTGACAACACATGCCATAATCTAGTTTTCAATGATGTTGTTTCAAACATAACGTTCTCCCAGTCTACAA GGTTAACTTCAACCCCATTAAATCTGCTCATCGTCTTCTTGGTGTCATTATGTTCTATAAGCACTACGGGGTTTAAGTTTGTCCGGTGA
AA sequence Show only first row Show all	>Potri.014G110900.1 pacid=42763385 polypeptide=Potri.014G110900.1.p locus=Potri.014G110900 ID=Potri.014G110900.1.v4.1 annot-version=v4.1 MKQVQVLSLFVFTLIGNVLSGSNHVFQDLKDRQGVLSFLEYYAAVSPSSSVTDKPLMVGLTLIQGADSSGAVCLDGTLPGYHLDRGSGTGKDSWLVQLEG GGWCDTIRNCVYRKTTRRGSSKLFEKQLPFTGILSDKAEENPDFFNWNRVKVRYCDGASFSGDSQNEASQLYFRGQRIWSAAMEYLMAEGMQNATQALLS GCSAGGLASIIHCDEFRELFPQSTKVKCLSDAGMFLNAMDISGGHTLQNFYSGVVSLQEVQKSLPSTCIDHLDPTSCFFPQNLVAAVRTPLFLLNSAYDV WQLRSSLAPPSADPHGTWKECRQNNAQCNSSQIQFLQEFRNQMLDAIKVFSSSNQNGLFINSCFAHCQSERQDTWFADDSPRIGNKRIAQSVGDWYFDRE DVKAVDCPYPCDNTCHNLVFNDVVSNITFSQSTRLTSTPLNLLIVFLVSLCSISTTGFKFVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62060			Pectinacetylesterase family pr...		Potri.014G110900 [exp]	0	1
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	2.00	0.9335
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	4.89	0.9153	CYP51G5,CYP51.1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	5.91	0.9193	Pt-SAH7.2
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	6.00	0.9325	Pt-RGP3.4
AT3G13410			unknown protein		Potri.012G124888 [exp]	6.32	0.9019
AT5G18610			Protein kinase superfamily pro...		Potri.010G215100 [exp]	8.94	0.9084
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	10.58	0.9124
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	12.72	0.9263
AT3G21690			MATE efflux family protein (.1...		Potri.011G002700 [exp]	13.85	0.8831
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	18.11	0.9209

Compare expression of checked genes

Potri.014G110900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.