Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46940 148 / 4e-43 unknown protein AT3G62070 135 / 2e-38 unknown protein AT4G01670 127 / 4e-35 unknown protein AT2G31560 63 / 1e-11 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 62 / 2e-11 Protein of unknown function (DUF1685) (.1) AT1G05870 61 / 8e-11 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT1G08790 40 / 0.0006 Protein of unknown function (DUF1685) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185700 [exp] 429 / 7e-153 AT2G46940 111 / 4e-29 unknown protein Potri.007G126700 [exp] 67 / 6e-13 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 60 / 2e-10 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.005G055100 [exp] 45 / 1e-05 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.013G042400 [exp] 45 / 2e-05 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007198 [exp] 205 / 7e-65 AT2G46940 157 / 1e-46 unknown protein Lus10038023 [exp] 204 / 3e-64 AT2G46940 162 / 4e-49 unknown protein Lus10010083 [exp] 203 / 5e-64 AT2G46940 160 / 7e-48 unknown protein Lus10009965 [exp] 124 / 7e-34 AT2G46940 89 / 4e-21 unknown protein Lus10027022 [exp] 59 / 6e-10 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10025562 [exp] 59 / 6e-10 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10042536 [exp] 44 / 3e-05 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 41 / 0.0002 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 40 / 0.001 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G111000.1 pacid=42762773 polypeptide=Potri.014G111000.1.p locus=Potri.014G111000 ID=Potri.014G111000.1.v4.1 annot-version=v4.1 ATGGCTTCAGATGAGAGTATGGCCTTGCTTTCTTCTTCAGTTCAAGAAGATGATCCATATGATCATGACACGGATGATGGGTATCAGCCTCCTAGTCTTC ATAACCTGTCTAGGTTGTCCATGTGTACAAGTTCCTTGTACACCAATGAAGATGATGATTATCAAGATTGTGATGGGATGAAGATGTTTCTTTCAAGATT GCCTGCAGAGAATTTTGATGCTGATGAGGAACTCTCTGATGATCATAAAGAAGGCAATAACAAAAACACACTTGACCTCTCTTCAGATTCTGATGAAGAG CCAGGGTGCTACTCACTTCCAGCGACACCACCTCGGAGGAGAAATCGTGGTGGCTTAATAAATCAAGTACAGTTAATTGGAGCGAAAGATTATGCCAGTG AAAATGAAGCTCAAAAGGGTATCACGAGACAAAAGATGAGAAAGAATTTGAGGAAAAGAAGGGTCATAAGAGAAAGGTGGATGGACAATAACAACATGAG TTTTAAAAAGAAAGAAGAGGAGATGACGGGGGTGAGTAATTATGGGTATTGTAATAGTTTTAGTGGGGAGAGTGAAGGTGGTGGGTTGGTAGTGATAACA AGGCCGAAAGGAGGGAGGAGGTCGTTGTGTATGGACTTGGATGAAGTGAAGGCTTGTAGGGATCTTGGGTTTGAATTGGAACATGAGAGGATGCTAGAGA TGCCTGGTCGTGTCTCCCTTTCAGGATCTACTCTTGATACTAGCAGTGGTGGCAATTCTCCTATTGCCAACTGGCGCATCTCTAGCCCTGGTGATGATCC GCGAGATGTTAAGGCAAGGCTCAAGGTATGGGCACAGGCAGTGGCAATTGCATCTGCATCTAGACATGGTGGCGTCTGA
AA sequence Show only first row Show all	>Potri.014G111000.1 pacid=42762773 polypeptide=Potri.014G111000.1.p locus=Potri.014G111000 ID=Potri.014G111000.1.v4.1 annot-version=v4.1 MASDESMALLSSSVQEDDPYDHDTDDGYQPPSLHNLSRLSMCTSSLYTNEDDDYQDCDGMKMFLSRLPAENFDADEELSDDHKEGNNKNTLDLSSDSDEE PGCYSLPATPPRRRNRGGLINQVQLIGAKDYASENEAQKGITRQKMRKNLRKRRVIRERWMDNNNMSFKKKEEEMTGVSNYGYCNSFSGESEGGGLVVIT RPKGGRRSLCMDLDEVKACRDLGFELEHERMLEMPGRVSLSGSTLDTSSGGNSPIANWRISSPGDDPRDVKARLKVWAQAVAIASASRHGGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46940			unknown protein		Potri.014G111000 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G127600 [exp]	1.41	0.8666
AT3G06390			Uncharacterised protein family...		Potri.008G205000 [exp]	4.89	0.8226
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.004G161500 [exp]	5.19	0.8223
AT4G02250			Plant invertase/pectin methyle...		Potri.001G127500 [exp]	6.63	0.8012
					Potri.005G239800 [exp]	11.87	0.8485
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116100 [exp]	16.30	0.8067
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052166 [exp]	20.39	0.8648
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.017G134800 [exp]	25.49	0.7972	Pt-ZFP4.1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	27.11	0.8137
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.002G024000 [exp]	29.17	0.7879

Compare expression of checked genes

Potri.014G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.