Plant FIBer expression Database

Potri.014G111500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46980 303 / 4e-90 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G186200
[exp]
1240 / 0 AT2G46980 312 / 1e-93 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009259
[exp]
429 / 2e-137 AT2G46980 258 / 2e-74 unknown protein
Lus10038019
[exp]
397 / 8e-125 AT2G46980 243 / 1e-68 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G111500.2 pacid=42762391 polypeptide=Potri.014G111500.2.p locus=Potri.014G111500 ID=Potri.014G111500.2.v4.1 annot-version=v4.1
ATGATGGAGGTTGATACGGGACATAAATTACAAGATGATCAAATGAGCGACTGTCGCAGTTTTGGCAGCAATTATCATCCATCTAGCCAATCTAGAAAGA
TTTCGATTGGAATTCTGATTGACTCATTGCCAAAGAAAAGATCCGGAGGCACGAAGGAAGATGAAGCTGCAGTACCAAACATAGAAAGGGTAAATTCTAA
GAAAGAAAGTTCAGTTGAAAGCAAAAAAAAGGGAAAAGGTGCCATTGATGCTACCACTAAAGGGAAACAAACTGAAACTCCTGGGCGGGTCCCTTCCCCT
TGGACTACTACAAGATCCTTTCACCAAAAATCACCAATTTCTGAGGGTGTTCTTCACGCTGTAGGAACTTCCAGCTTACCACGCTCTACTGGGAGGAGGA
ACAGGATTAGCACAGCAAAGAATGTGCCTGTAACACATTCAGTAGAGTTTTTTGCCAAACATACATCAAATTCACATTCTGGTGATGGAAAGGAGAAGTT
TGGTGGATTCACATACAAAAGGAAGGGAGGAGAGGATAGAAACTCACAGCCAGGAGAGGAATTTACATTTGCAACTGCACAAGAAGGCTCTATGCTGGAT
AAAGTGGCAACAGATGATAAAACGGAAGAGAGAACTGAAACTTTGAAAATGAAACTATGGGAGATATTGGGAAACGTTTCTTCACAAAAAATTCAGCCAT
CTAATTCTCAGGCTCATCAGATTGGTGCCAATAATTTAAATCCGGAGCAAATTCTTAACCAAGCAGATGATGTGGTTGTCAAGCCTAGACAGAGCCCAGA
TACCATAGAAACTGATTCTGAAAGTCCCAATCATACTATGAAGAGACCAGTGACTCGTTCTTTGACCCGAAAGAGAGCTTCAACCAAACAGAAACCAGAG
AAAAATAAAGTTGGTCCATCCTCCAGTTACAGACAAAAACTTAAAGAGAAGAATGTCTTCTCCTTTGAAGAACGATTGCCTGGAAAACAAAATGTTGCTG
TCAATGGTGGCTCCTCAATGTCTACAATGAAGAAGGGCCAGATAAAGAGTTGCGGCATCGAACCATGTAAGACTCACGTCAGTGAAGACTACAATGCAGA
TAAGATTCAGGAAGGAATTCACAAGAGTGAAAGATCACTCCCTGCTGAGAAAACATCTTCTCTTAGCAATAAAAAGGGAAGTATTCACTGTTCTCTTCAG
AATAAGAGAGAGTGCCGTGAACCAAAGAACGGAAACAAAGAAAGAGATTCCAATCAATCTGCAAGGGAAGCATCGTTCTCCGCTGAGAAAACATTTTCAC
TTAGCAATAAAATGGGAAATTTTCATGATTCTCCTAGGAACAAGAGAGAGCACCTCGAACTGAAGAATAGAAACCAAGAACGATATTCCCATCAATCTGG
AAGGGAAGATTCCCATCAGTCCCCGTGGACACACATGACTGATCAACAGAAGGATTTTAACAGCCCAGCAGCACCTGAACATGGGGATCAACAAGAAAAC
TTTGATACTCCCTCCTCAAATAGTACTGTCAACCCACAGGATGATTTCCAGAGTCCAACATTCAAAATCAATTCCCCTACCTTAAGTTCCTTCCCAAGCT
CAATGCCAAAATCTGATCAGAGAAAGCAGGTTTTTGCCAGCCCTGAACAAGCAATGAGAAGCTTTACTGTGGGAAAAATCCATAGCTTCTGGACTCTCAG
GAATTCAAATGCAGGTTGTTTTGCCTCAAATAGTCAAACAGAATCACCTGATATTGCAGCAGAACTTATGGATTCCCCACCCAACAAAACATTACCTGTT
AAGGGGAAAAGAGATGTGGAAGGTGGTCTTTCTGAATCATCTCCTGAATGTGGATACTCTGAGAGCTCCGAAGATGGTTCACCTCTTGTTAAGGGTCGTA
GGGAAGAAGAAAACTGCTCTACAGAAACTGCAACAGCTGAAAAATCAAAGTTCATGCTTCATCCAACTAAAAGGTTCTGCAACCACAAAGGTGAAAAAGT
GAGAGTATTTAGTCCCACCTCGCCCTCTCCAACAGGCATTGTTGAAACTGAGTTGACTCCTGAGATTTCAGAACAAAACCAAGGGGATGAACTAGAAAGG
GTCATCTTGCTATTTGTCATGGCTTTAGAAAACTTCCGAAAGAAAATGAAGTTGGAGACTGGAAAGAAATCCTCTGATATTTTGGTGTCTGTCTCAGAGA
AGATGCATCTACAGTTGCAGAATATTGAGTCACAAATCCAAACAGATCTGGGGAAGCTGTCAAGTGTTAGTAAATCAAAAAGAAAACGGCTGGAGTCTAG
ATTTGAAGAACAACAAGAGCAGCTAAAATTGATACACGATAAATTCAAACAAGATATTTACCAGCATCTCCAGGAGTGTAAAATCACTCTTGAAGGACTA
GAATTGCACCAGATTGACTTCAAAGGAACCGTGAAAAAGCAAAAAGCATCACACCAGAAGCTTCTGATGCAAGCGGAAGAAACAGTGAAGACACAGCTAG
ATGATGCACAAAGAAGAATCACAGCTGTGCACAAGTCAGCAAGGGAAAAAATGCTCCAGTTGAAGTATGTTGTAGGCAAGGGCTTGAATGAGGGTGGTCT
AAGTTGA
AA sequence
>Potri.014G111500.2 pacid=42762391 polypeptide=Potri.014G111500.2.p locus=Potri.014G111500 ID=Potri.014G111500.2.v4.1 annot-version=v4.1
MMEVDTGHKLQDDQMSDCRSFGSNYHPSSQSRKISIGILIDSLPKKRSGGTKEDEAAVPNIERVNSKKESSVESKKKGKGAIDATTKGKQTETPGRVPSP
WTTTRSFHQKSPISEGVLHAVGTSSLPRSTGRRNRISTAKNVPVTHSVEFFAKHTSNSHSGDGKEKFGGFTYKRKGGEDRNSQPGEEFTFATAQEGSMLD
KVATDDKTEERTETLKMKLWEILGNVSSQKIQPSNSQAHQIGANNLNPEQILNQADDVVVKPRQSPDTIETDSESPNHTMKRPVTRSLTRKRASTKQKPE
KNKVGPSSSYRQKLKEKNVFSFEERLPGKQNVAVNGGSSMSTMKKGQIKSCGIEPCKTHVSEDYNADKIQEGIHKSERSLPAEKTSSLSNKKGSIHCSLQ
NKRECREPKNGNKERDSNQSAREASFSAEKTFSLSNKMGNFHDSPRNKREHLELKNRNQERYSHQSGREDSHQSPWTHMTDQQKDFNSPAAPEHGDQQEN
FDTPSSNSTVNPQDDFQSPTFKINSPTLSSFPSSMPKSDQRKQVFASPEQAMRSFTVGKIHSFWTLRNSNAGCFASNSQTESPDIAAELMDSPPNKTLPV
KGKRDVEGGLSESSPECGYSESSEDGSPLVKGRREEENCSTETATAEKSKFMLHPTKRFCNHKGEKVRVFSPTSPSPTGIVETELTPEISEQNQGDELER
VILLFVMALENFRKKMKLETGKKSSDILVSVSEKMHLQLQNIESQIQTDLGKLSSVSKSKRKRLESRFEEQQEQLKLIHDKFKQDIYQHLQECKITLEGL
ELHQIDFKGTVKKQKASHQKLLMQAEETVKTQLDDAQRRITAVHKSAREKMLQLKYVVGKGLNEGGLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46980 unknown protein Potri.014G111500
[exp]
0 1
AT5G62410 TTN3, ATSMC4, A... TITAN 3, structural maintenanc... Potri.003G108400
[exp]
9.48 0.8017 CPE902,Pt-SMC2.2
AT3G22780 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO... Potri.006G251200
[exp]
17.37 0.8001 Pt-CPP1.22
AT4G13690 unknown protein Potri.003G177900
[exp]
19.49 0.7967
AT1G27880 DEAD/DEAH box RNA helicase fam... Potri.010G056500
[exp]
21.14 0.7968
AT1G03780 AtTPX2, TPX2 targeting protein for XKLP2 (.... Potri.007G138600
[exp]
36.08 0.7819
AT4G22860 Cell cycle regulated microtubu... Potri.003G117800
[exp]
36.19 0.7929
AT2G38720 MAP65-5 microtubule-associated protein... Potri.003G192400
[exp]
39.68 0.7698
AT3G57060 binding (.1.2) Potri.006G041500
[exp]
40.69 0.7913
AT5G19330 ARIA ARM repeat protein interacting... Potri.005G210000
[exp]
48.74 0.7810
AT4G14180 ATPRD1 putative recombination initiat... Potri.002G232700
[exp]
51.42 0.7633

Potri.014G111500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.