Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01690 845 / 0 PPOX, HEMG1, PPO1 Flavin containing amine oxidoreductase family (.1.2) AT5G14220 179 / 6e-50 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT1G57770 47 / 3e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G02350 42 / 0.0002 protoporphyrinogen oxidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186300 [exp] 1031 / 0 AT4G01690 822 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.001G333500 [exp] 167 / 2e-45 AT5G14220 701 / 0.0 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) Potri.017G144001 [exp] 46 / 4e-05 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 43 / 0.0005 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007194 [exp] 857 / 0 AT4G01690 809 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Lus10010082 [exp] 854 / 0 AT4G01690 823 / 0.0 Flavin containing amine oxidoreductase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.014G111600.3 pacid=42763317 polypeptide=Potri.014G111600.3.p locus=Potri.014G111600 ID=Potri.014G111600.3.v4.1 annot-version=v4.1 ATGACTTCTACCTTCACTGACCTCTCTCTTCTCCGGCCAACAATACCCTCTCTCATTCCCTCCTCTTTCTCAAAATTCACCACTCACAGACCCTTAAAAC TCCGTTGCTCCCTAACCGAAGATTCAACGACATTTATTCCCTTCAAGCTCAACGGCGAAGCCCAATCCAGCGCCGGACATTCTGCCACAGCGGATTGTGT CATTGTTGGAGGCGGAATTAGTGGGCTCTGTATCGCACAAGCTCTTGCAACCAAACACTGGGATGTTGCTCCCAATGTGATTGTCACGGAAGCCAGAGAT CGCGTTGGTGGCAACATCACCACCCTTGAAAGAGATGGTTATCTCTGGGAAGAGGGCCCCAACAGTTTCCAGCCTTCCGATCCTATGCTCACCATGGTGG TGGATAGTGGATTGAAGGAGGATTTGGTATTAGGGGATCCAAATGCGCCGCGTTTTGTATTGTGGGATGGGACATTAAGACCAGTACCAGGCAAGCCGAC TGACTTGCCGTTTTTTGATTTGATGAGTATTGGTGGCAAGCTCAGAGCTGGCTTTGGTGCTCTTGGACTTCGGCCTCCGCCACCAGGACACGAGGAATCA GTTGAAGAGTTTGTGCGGCGTAACCTTGGCGATGAGGTTTTCGAGCGATTGATAGAGCCTTTTTGTTCAGGTGTTTATGCGGGTGATCCTTCCAAACTAA GCATGAAAGCGGCATTTGGAAAAGTTTGGAACCTGGAGCAAACTGGCGGTAGTATCTTTGGTGGGACTTTCAAAACAATCCAGGAGAGAAGTAAAAACCC CAAGCCACCTCGAGACCCGCATCTTCCAACGCCAAAGGGCCAAACTGTTGGATCTTTTAGAAAAGGACTTGCTATGTTACCTGATGCAATAGCAACAAGG TTGGGTAGCAATGTAAAATTATCTTGGAAGCTTTCAAGCATCATTAAATTAGAGAATGGAGGGTATAGTTTGACATATGAAACACCAGAAGGATTAGTTT CTCTACTGAGCAAAAGCGTGGTCTTCACTGTTCCATCCCACATTGCAAGCACTCTACTGCATCCCCTTTCTCCTACAGCTGCAGATGCACTATCAAAATT ATATTACCCACCAGTTGCGGCAGTGTCCATTTCATACCCAAAAGAAGCAATTAGACCAGAACGCTTAATAGATGGTGAACTCAAGGGGTTTGGTCAGCTG CATCCACGAAGCCAAGGGGTGGAAACCTTAGGAACCATATATAGCTCATCTCTTTTTCCTAATCGAGCACCTGCTGGAAGGATTTTGCTCTTGAACTACA TTGGAGGAGCTACTAACCCTGGAATTGTGTCTAAGACAGAGAGCGAACTTGTAGAAGCAGTTGATCGTGATTTGAGAAAGATTCTCATAAATCCTAATGC GACAGATCCACTTGTATTAGGGGTGAGAGTGTGGCCACAAGCAATCCCCCAGTTCTTGATTGGTCATTTTGATATCCTAGATGCTGCAAGAGATGCTCTC AAGGAAAAAGGGTTGCAGGGGCTGTTTCTTGGGGGAAACTTTGTATCTGGTGTCGCATTGGGCCGATGTGTAGAAGGGGCTTATGAGGTTGCTTCTGAGG TAACTGATTTCCTCTCCCAATACGCCTACAAATAG
AA sequence Show only first row Show all	>Potri.014G111600.3 pacid=42763317 polypeptide=Potri.014G111600.3.p locus=Potri.014G111600 ID=Potri.014G111600.3.v4.1 annot-version=v4.1 MTSTFTDLSLLRPTIPSLIPSSFSKFTTHRPLKLRCSLTEDSTTFIPFKLNGEAQSSAGHSATADCVIVGGGISGLCIAQALATKHWDVAPNVIVTEARD RVGGNITTLERDGYLWEEGPNSFQPSDPMLTMVVDSGLKEDLVLGDPNAPRFVLWDGTLRPVPGKPTDLPFFDLMSIGGKLRAGFGALGLRPPPPGHEES VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWNLEQTGGSIFGGTFKTIQERSKNPKPPRDPHLPTPKGQTVGSFRKGLAMLPDAIATR LGSNVKLSWKLSSIIKLENGGYSLTYETPEGLVSLLSKSVVFTVPSHIASTLLHPLSPTAADALSKLYYPPVAAVSISYPKEAIRPERLIDGELKGFGQL HPRSQGVETLGTIYSSSLFPNRAPAGRILLLNYIGGATNPGIVSKTESELVEAVDRDLRKILINPNATDPLVLGVRVWPQAIPQFLIGHFDILDAARDAL KEKGLQGLFLGGNFVSGVALGRCVEGAYEVASEVTDFLSQYAYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.014G111600 [exp]	0	1
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	14.66	0.8956
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	17.32	0.8934
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.009G037000 [exp]	23.43	0.8907
AT3G06840			unknown protein		Potri.008G219500 [exp]	25.09	0.8616
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	27.92	0.8707
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.005G121850 [exp]	28.84	0.8900
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	29.79	0.8805
					Potri.012G012100 [exp]	32.32	0.8728
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.002G207800 [exp]	33.16	0.8271	Pt-TIR1.1,FBL2
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.009G049400 [exp]	33.58	0.8715	CHLD.1

Compare expression of checked genes

Potri.014G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.