Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01720 298 / 9e-96 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G62300 266 / 2e-82 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G04450 247 / 1e-75 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G22070 233 / 5e-70 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT5G15130 171 / 8e-47 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G68150 154 / 5e-42 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 150 / 9e-40 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT1G69810 143 / 6e-38 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT1G80840 108 / 2e-26 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 105 / 3e-25 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186600 [exp] 709 / 0 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.004G007500 [exp] 276 / 8e-86 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.014G155100 [exp] 269 / 5e-83 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G228400 [exp] 265 / 3e-81 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.011G007800 [exp] 257 / 1e-78 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.015G064100 [exp] 172 / 7e-47 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 162 / 7e-44 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.017G079500 [exp] 158 / 2e-42 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.003G182200 [exp] 113 / 9e-28 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022959 [exp] 218 / 2e-64 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10038028 [exp] 215 / 3e-64 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10021554 [exp] 212 / 7e-62 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10035286 [exp] 204 / 4e-59 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10009969 [exp] 192 / 4e-58 AT4G04450 166 / 8e-49 WRKY family transcription factor (.1) Lus10015546 [exp] 182 / 9e-53 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10035971 [exp] 154 / 3e-41 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10023615 [exp] 154 / 1e-40 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 154 / 4e-40 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 150 / 8e-40 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G111900.1 pacid=42763123 polypeptide=Potri.014G111900.1.p locus=Potri.014G111900 ID=Potri.014G111900.1.v4.1 annot-version=v4.1 ATGGATAAACAAGGCCGTGAATTGGTGTTCTTCCACTCCGGTGACTTTCTCCGGCAAAACCCAGGTGTTTCCGATCACACAAATGACAGTTCGGGTGATC ATACCAGGTCCATAACCAAAGAAGTTGACTTCTTCTCTACTGATAGGACTAGCGAATTGCCAGGTACTGATCAAGAGAAGAGGATTAGTACTATTGGATC ATCAAGTCTAGTTGATTCTAGCATAAACACCGGATTGAATCTGTTAACTTCAAATTCCGGGATTTCAATAATAGCAAATGTCAAGAACCCCGATAATAAT GAACTGAGTGGACTACAAGGAGAGTTAGAGAGACTGCATGATGAGAATAAGAAGCTGAGAAGCTTGTTGGATCAGATTACCAAAAGTTACAGGGACCTGC AAGCCCAATTAATCATGGCAACGCAAAAACAGACACAAGGGAATCGGATAGAGCAGAAAGGGGAGCTAAATGACACACCAGGTTCCATAATGTCAGCTCA ACATTTAATGGACCCACGGCCACGGCCATCTGTCACTTTAGATGTCAATGATCCTTCGGTATCCGACGACAAGACGCAAGAAGTGTTGGTCTCTTCAACA AATACAGTGGGAACGAAGTCTCAAATGCTAGGGAAACGAGCTTCGATGGAGGATGGCCTTGATCAAACATCCCAGAGCTGGGGATCCTCTAAAAGTCCAA AACTAGAACATGAGAAGCCTGATGAGCAAACACCAGAGGTGCCTTTCAGGAAGGCTAGAGTGTCCGTACGAGCAAGATCGGATGCTCCTTTGATAAGCGA TGGGTGCCAGTGGAGGAAGTATGGTCAAAAGATGGCCAAAGGAAACCCTTGTCCCCGCGCCTACTATCGTTGCACCATGGCTGTTGGATGCCCAGTCCGC AAGCAGGTGCAAAGATGTGCAGAAGACAAGACCATTCTCATTACGACATATGAAGGGAACCACAACCACCCTCTTCCCCCAGCAGCTACAGCTATGGCAA GTACTACCTCAGCTGCAGCAGCGATGCTCCTATCAGGTTCAACCACTAGCAAAGAAGGCCTGTCCTCAAGTAGTAGCTTCTACCCTTCTTTTCCCTACGC GTCAACAATGGCTACCCTATCTGCTTCTGCACCATTTCCCACTATAACCCTGGACTTGACACAAGGCCCAAACACTACAATGCCATTTCACCGCACCTCT CCTTCTCCAGCCACGTTCCCCCTTCCTCTACATGGCTTCCCACAACTCCTAGGGCACCCGATGTATGCCTCTCCTAAGTTACCTGCAATTCCATCCGTGC AATTAGGGCAGCGGCATGCTTCAATGGTTGAGACAGTTACCGCAGCCATTGCTTCTGACCCAAACTTCACAGCAGCCTTAGCAGCAGCTATCTCAACATT TATGGGTACACCAAGGAGCAGTGATGGAGCTAACAACCATAATGCACCTAGTGGAATACCTGGATCTCCACAGCTTCCTCAATCTTGCACAACCTTTTCC ACCAACTAG
AA sequence Show only first row Show all	>Potri.014G111900.1 pacid=42763123 polypeptide=Potri.014G111900.1.p locus=Potri.014G111900 ID=Potri.014G111900.1.v4.1 annot-version=v4.1 MDKQGRELVFFHSGDFLRQNPGVSDHTNDSSGDHTRSITKEVDFFSTDRTSELPGTDQEKRISTIGSSSLVDSSINTGLNLLTSNSGISIIANVKNPDNN ELSGLQGELERLHDENKKLRSLLDQITKSYRDLQAQLIMATQKQTQGNRIEQKGELNDTPGSIMSAQHLMDPRPRPSVTLDVNDPSVSDDKTQEVLVSST NTVGTKSQMLGKRASMEDGLDQTSQSWGSSKSPKLEHEKPDEQTPEVPFRKARVSVRARSDAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR KQVQRCAEDKTILITTYEGNHNHPLPPAATAMASTTSAAAAMLLSGSTTSKEGLSSSSSFYPSFPYASTMATLSASAPFPTITLDLTQGPNTTMPFHRTS PSPATFPLPLHGFPQLLGHPMYASPKLPAIPSVQLGQRHASMVETVTAAIASDPNFTAALAAAISTFMGTPRSSDGANNHNAPSGIPGSPQLPQSCTTFS TN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Potri.008G032901 [exp]	1.41	0.9297
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	1.41	0.9330
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.008G094000 [exp]	3.87	0.9228
AT1G20070			unknown protein		Potri.002G019700 [exp]	5.09	0.8991
AT5G58950			Protein kinase superfamily pro...		Potri.007G085300 [exp]	8.18	0.8640
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	9.38	0.9134
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.009G016700 [exp]	12.64	0.8884
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	13.26	0.8925	HMGB915
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	14.69	0.8872
AT4G14090			UDP-Glycosyltransferase superf...		Potri.004G083700 [exp]	15.58	0.9082

Compare expression of checked genes

Potri.014G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.