Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01730 526 / 0 DHHC-type zinc finger family protein (.1) AT2G33640 205 / 3e-59 DHHC-type zinc finger family protein (.1) AT4G15080 197 / 2e-55 DHHC-type zinc finger family protein (.1) AT3G22180 195 / 9e-55 DHHC-type zinc finger family protein (.1) AT1G69420 183 / 5e-51 DHHC-type zinc finger family protein (.1.2) AT5G20350 71 / 1e-12 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G26935 66 / 2e-11 DHHC-type zinc finger family protein (.1) AT3G04970 65 / 3e-11 DHHC-type zinc finger family protein (.1.2) AT3G56930 64 / 1e-10 DHHC-type zinc finger family protein (.1.2) AT5G41060 64 / 1e-10 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186800 [exp] 764 / 0 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 207 / 2e-59 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 193 / 7e-58 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 183 / 6e-51 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 181 / 6e-50 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.016G018400 [exp] 147 / 1e-37 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 144 / 1e-36 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 67 / 9e-12 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 65 / 4e-11 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038029 [exp] 563 / 0 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 491 / 5e-171 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1) Lus10026632 [exp] 192 / 4e-55 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10016036 [exp] 191 / 2e-53 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10036798 [exp] 182 / 1e-50 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 180 / 1e-50 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10039043 [exp] 155 / 2e-40 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 150 / 1e-38 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10030426 [exp] 139 / 9e-36 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10025157 [exp] 140 / 1e-35 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.014G112000.1 pacid=42764412 polypeptide=Potri.014G112000.1.p locus=Potri.014G112000 ID=Potri.014G112000.1.v4.1 annot-version=v4.1 ATGATGTTCATGAGGCGCCATGGCTGGCAACGCCCTCTCCACCCTTTACAGATGGTGGGAATGACAGTTTACAGTTTTCTGGTTGTGGCCTTCTACGCAT TCCTTGGACTTTTCCTTGGAAACAGAATTGCTGAAATTACAGTCACTACAATCTTTACTTTTGTGGCAGTTTCGGTTATGTTCCTGTTTATTAGGTGCAT TGCCATTGATCCAACTGATAAGACCAGGTTTAGAAAGAAGAAAAGAGCTAAATCAAATGGGTTTTCAAAGTTAAATTATGGGTTTATATTGAGTCAGATA TTTGTGAGGTTTTTTAGAAGGATAGAAAGAAAGATCCTTAAAACTTTTATAAGGAGAAAGTATTTGGACCCTTTAAAGGTCAGTGCTCAAATGGAGCCAT TGCTTCCATTTCCACTTGTCATGAAGGATGATGCAGTTTCACCTGATCCAAAAGATGATGACATATCTTATTGCTCGCTATGTGATTTTGAGGTAAAGAA GCACAGTAAGCACTGTAGGACCTGTAACAGGTGCGTTGAAGGATTTGATCACCATTGCAGGTGGCTAAACAACTGTGTTGGCAAGAGGAATTACACAACT TTCATTCTTCTGATGATATTTGTCTTGTTAATGTTGATTATAGAAGGAGGAACTGCCACTGCCATATTCGTGAGGTGTTTTACTGATAAGAAAGGAATAG AGAGGGAGCTGGAGAGGAGGCTGCATGTAGAGTTCCCAAGAGCGGTTCTTGCCACAATATCAGTTTTGTTGGTTTTAATGTCAGCTTATAGTTCAGCAGC CATGGGACAACTTTTCTTTTTTCATGTGGTTCTCATACGCAAGGGAATGAGAACATATGATTATATCCTGGCTATGAGAGAGGTGAACGAATCAATGGAA CTAGATCCATTTGATGATTCAGATTTCTCTTCAGACTCTGATTTTGACTCTCCTAAAAAATCAACAATTGTTTCACGCTTTATTTGTGGTCATAGGGGAA ATCAGAACCCTGCAAGTCTGTCAATAAGAATTGATAGAGATCCCGAGTCTTCTACCTTAACCAAGAAACAAGGCTTTCACGCAAGCATCAATCCATGGAA ACTAATCAAGTTGAGCAAAGAGAAAGCTCTGCTAGCAGCCGAGAAGACCAGAGAAAGGATTATGAAACAGAAACCAGTAGAGCAACCATTAAGGCCCCTA CCCTTGGAGACAAAATGTGGACCATTGATGAACCAAGACAAGAATATGACCACTATGGAATCAGGTTCAACACCACTCGTTTCCAAAGGGAGGGCCCCAG TGTCACCCGGAAGGTTCTCAAGTCCAAGAAGGCGATTTTCTGGCTCCCAGAGCATGTTTTCTGGCTTCATACCTTCGCCAAAGAATAAGTACAGAAGTAG TTTTGATTTGAAGTTGACAGAAGTTTCCAGGGAGCTTGAAACCTATATTTCGAAGCAGGTTTTATGTTCTGTTATGAAGAAAGATGCCCATGAGGCTTCC CCAAAATAA
AA sequence Show only first row Show all	>Potri.014G112000.1 pacid=42764412 polypeptide=Potri.014G112000.1.p locus=Potri.014G112000 ID=Potri.014G112000.1.v4.1 annot-version=v4.1 MMFMRRHGWQRPLHPLQMVGMTVYSFLVVAFYAFLGLFLGNRIAEITVTTIFTFVAVSVMFLFIRCIAIDPTDKTRFRKKKRAKSNGFSKLNYGFILSQI FVRFFRRIERKILKTFIRRKYLDPLKVSAQMEPLLPFPLVMKDDAVSPDPKDDDISYCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWLNNCVGKRNYTT FILLMIFVLLMLIIEGGTATAIFVRCFTDKKGIERELERRLHVEFPRAVLATISVLLVLMSAYSSAAMGQLFFFHVVLIRKGMRTYDYILAMREVNESME LDPFDDSDFSSDSDFDSPKKSTIVSRFICGHRGNQNPASLSIRIDRDPESSTLTKKQGFHASINPWKLIKLSKEKALLAAEKTRERIMKQKPVEQPLRPL PLETKCGPLMNQDKNMTTMESGSTPLVSKGRAPVSPGRFSSPRRRFSGSQSMFSGFIPSPKNKYRSSFDLKLTEVSRELETYISKQVLCSVMKKDAHEAS PK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01730			DHHC-type zinc finger family p...		Potri.014G112000 [exp]	0	1
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	2.23	0.9774
AT5G15510			TPX2 (targeting protein for Xk...		Potri.017G092100 [exp]	3.16	0.9769
AT4G02800			unknown protein		Potri.005G209400 [exp]	3.46	0.9743
AT5G01910			unknown protein		Potri.016G138300 [exp]	3.46	0.9691
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	4.24	0.9614	Pt-ACT2.4
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	4.47	0.9721
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	6.92	0.9551
AT2G16270			unknown protein		Potri.009G084400 [exp]	7.41	0.9711
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	10.19	0.9636
AT2G33400			unknown protein		Potri.010G067300 [exp]	10.48	0.9653

Compare expression of checked genes

Potri.014G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.