Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62110 651 / 0 Pectin lyase-like superfamily protein (.1) AT4G23820 457 / 6e-159 Pectin lyase-like superfamily protein (.1) AT3G61490 454 / 4e-157 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 452 / 5e-156 Pectin lyase-like superfamily protein (.1) AT3G16850 449 / 2e-155 Pectin lyase-like superfamily protein (.1) AT5G41870 437 / 5e-151 Pectin lyase-like superfamily protein (.1) AT5G49215 437 / 8e-151 Pectin lyase-like superfamily protein (.1.2) AT4G33440 431 / 3e-148 Pectin lyase-like superfamily protein (.1) AT3G48950 431 / 4e-148 Pectin lyase-like superfamily protein (.1) AT3G06770 422 / 5e-145 Pectin lyase-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186900 [exp] 828 / 0 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 475 / 1e-165 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 474 / 1e-165 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 464 / 6e-161 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 462 / 3e-160 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G162400 [exp] 456 / 5e-158 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 450 / 8e-156 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 440 / 3e-151 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 435 / 2e-149 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038030 [exp] 678 / 0 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009972 [exp] 487 / 2e-172 AT3G62110 446 / 2e-156 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 467 / 1e-162 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 467 / 3e-162 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10037714 [exp] 463 / 4e-161 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 455 / 9e-158 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 453 / 5e-157 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 440 / 3e-151 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 435 / 2e-149 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 427 / 6e-147 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.014G112100.1 pacid=42763435 polypeptide=Potri.014G112100.1.p locus=Potri.014G112100 ID=Potri.014G112100.1.v4.1 annot-version=v4.1 ATGAGGAGATCTTTTACTCTAGTGGATGTGCTGCTGTTACTTGCATTGTTCATTGATGCTCCATGGGCTATCAGGGGCAACTCACATTGCCAATGGGGCA ACCCGGCAGTGATTCGACCTCACAGTGTTGCTATTACTGAATTTGGTGCGGTTGGAGATGGGGTCACTCTCAACACAAAGGCATTCCAGAATGCCATCTT CTATCTCAATTCATTTGCTGACAAGGGTGGGGCCAAGCTCTTTGTCCCAGCTGGCCAGTGGTTGACAGGAAGCTTTGATCTGATCAGTCATCTGACATTG TGGTTAGATAAGGATGCCATCATTCTTGGATCAACTAACTCTGATGATTGGCCAGTTATTGATTCACTACCATCATATGGCCGAGGGAGGGAGTTGCCTG GGAGGAGACACAAAAGCCTCATTTATGGTCGTAATTTAACAGATGTTATTATAACAGGTGACAATGGGACTATTGATGGTCAAGGCAGCATATGGTGGAA CTGGTTCCGAAATGAAACCCTGGACTACACCCGACCCCATCTGGTTGAATTGATGAACACTACTGGGGTGGTCATCTCAAACCTGACCTTCTTAAATTCA CCTTTCTGGACCATCCACCCTGTTTACTGCAGCCAAGTTATTGTCCAGAATGTCACGATCCTTGCTCCTCTTGATTCACCAAACACTGATGGGATTGATC CAGATTCTTCTGATGATGTTTGCATTGAAGACTGTTATATTAGCACCGGCGATGATATAATTGCCATCAAAAGTGGGTGGGATGAGTATGGCACATCATA TGCTCGTCCTAGCAAAAACATTACCATTCGCGGGCTTGTTGGACAAACTACTAGTGCAGGGATTGCAATTGGAAGCGAGATGTCTGGAGGAGTGTCAGAG GTTCATGCAGAAAATCTTACCTTCTACAATTCAACTACAGGTATCAGGATAAAAACGGCTCCTGGAAGGGGGGGCTATGTGAGGAACATCTATATATCAA ATATGAGCTTGACTGATGTCAAAACAGCTATAAGGTTCACTGGTCAATATGGAGATCACCCAGATGAGTCTTATGATCCAAAGGCTCTCCCTTTAATAGA ACGGATAACCATTGATGATGTCACAGGACAGAACGTTAAATATGCTGGCCTTTTAGAAGGTTTAGAAGGGGATACTTTTCTTGACATTTGCCTATCGAAC ATAAACCTCAGTGTGACCTCCAAGTCTCCATGGAATTGTTCATATATCCAAGGATATTCTGAAGCTGTTTCCCCAGAAATTTGTGAGCCTCTCAGGGAGA CAATCATCCCTGACCATTACTCAGGTTGTTACTATCCATCACATCACTTGCAAAGTTCAAGTAATGAAACAGAGGTGCTTGATTGTCTTGGTAAATTTAT GGTGGCATAA
AA sequence Show only first row Show all	>Potri.014G112100.1 pacid=42763435 polypeptide=Potri.014G112100.1.p locus=Potri.014G112100 ID=Potri.014G112100.1.v4.1 annot-version=v4.1 MRRSFTLVDVLLLLALFIDAPWAIRGNSHCQWGNPAVIRPHSVAITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTL WLDKDAIILGSTNSDDWPVIDSLPSYGRGRELPGRRHKSLIYGRNLTDVIITGDNGTIDGQGSIWWNWFRNETLDYTRPHLVELMNTTGVVISNLTFLNS PFWTIHPVYCSQVIVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDIIAIKSGWDEYGTSYARPSKNITIRGLVGQTTSAGIAIGSEMSGGVSE VHAENLTFYNSTTGIRIKTAPGRGGYVRNIYISNMSLTDVKTAIRFTGQYGDHPDESYDPKALPLIERITIDDVTGQNVKYAGLLEGLEGDTFLDICLSN INLSVTSKSPWNCSYIQGYSEAVSPEICEPLRETIIPDHYSGCYYPSHHLQSSSNETEVLDCLGKFMVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62110			Pectin lyase-like superfamily ...		Potri.014G112100 [exp]	0	1
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	1.00	0.8920
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	3.87	0.8718	XYL1.1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	6.00	0.8379
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	8.24	0.8649
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	8.48	0.8836
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	9.48	0.8528	Pt-TMKL1.1
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	14.66	0.8544
AT3G54000			unknown protein		Potri.010G195800 [exp]	20.19	0.8283
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	21.33	0.8282
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	21.49	0.8063

Compare expression of checked genes

Potri.014G112100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.