Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01800 1707 / 0 AtcpSecA, AGY1, SECA1 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) AT1G21650 692 / 0 SECA2 Preprotein translocase SecA family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078000 [exp] 698 / 0 AT1G21650 1753 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009973 [exp] 1638 / 0 AT4G01800 1589 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) Lus10038031 [exp] 1564 / 0 AT4G01800 1517 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) Lus10029715 [exp] 729 / 0 AT1G21650 1660 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10042747 [exp] 657 / 0 AT1G21650 1587 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01043 [poplar] [flax] SecA_PP_bind SecA preprotein cross-linking domain PF07516 [poplar] [flax] SecA_SW SecA Wing and Scaffold domain CL0023 [poplar] [flax] P-loop_NTPase PF07517 [poplar] [flax] SecA_DEAD SecA DEAD-like domain
Representative CDS sequence Show only first row Show all	>Potri.014G112266.2 pacid=42763282 polypeptide=Potri.014G112266.2.p locus=Potri.014G112266 ID=Potri.014G112266.2.v4.1 annot-version=v4.1 ATGGCCGCACCACCTCTAGTGAAGCACTCTACTTCTATCTCATCTTTCCCTTCTAATTCTCTACTGCTACCCCATCAAGATTTTTACAAAAAGACCAATC CGTGCTCTTCATTTTTTGGTGAAAATTCTCTAAATATGTTGAATTATGGAGCCAAGACGTCTAGATTGGTGAGTAATACAAGGAGGAAAATGTGTGCAGT GGCTTCATTAGGAGGTTTGCTAGGTGGGATTTTTAAAGGGACGGATACAGGTGAGTCCACTAGGAAACAGTATGCTCCAACTGTGAGTTTGATCAATCAA TTGGAAGCTGAGATTTCTGCTTTGTCTGATTCTCAATTGAGAGACAAGACTGCTGCTTTAAAGGAGCGTGCCCAACTCGGTGAATCTTTGGATTCCCTTT TACCTGAAGCATTTGCTGTAGTGAGAGAGGCTTCCAAAAGGGTTATAGGTCTCCGCCCGTTTGATGTGCAATTGATAGGGGGCATGGTTCTTCATAAGGG GGAAATAGCTGAAATGAGGACTGGAGAAGGAAAGACGCTTGTTGCCATTTTGCCAGCTTATTTGAATGCATTAAGTGGGAAAGGAGTTCATATTGTTACG GTCAACGATTATTTAGCTCGGAGAGATTGTGAATGGGTTGGTCAAGTTCCCCGTTTCCTTGGATTGAAGGTTGGCCTAATCCAACAGAATATGACAAGTG AACAAAGAAGAGAGAATTACATGTGTGACATCACATATGTTACCAACAGTGAGCTTGGTTTTGACTACTTGAGAGATAATCTTGCCATGACTGTTGAGGA GCTCGTCTTGAGGGATTTCAATTACTGTGTAATTGACGAGGTTGATTCCATCCTTATTGATGAAGCAAGGACCCCTCTCATTATATCTGGACCAGCAGAA AAACCAAGTGATCGGTATTATAAAGCTGCAAAAATTGCTACAGCCTTTGAACGAGACATACATTACACTGTGGATGAAAAGCAGAAAACAGTTCTCCTTA CAGAACAGGGTTATGGGGATACTGAAGAGATTTTGGATGTGAAGGATTTGTATGATCCTCGAGAACAGTGGGCTTCGTATATTCTGAATGCAATAAAAGC AAAAGAACTATTTCTTAGAGATGTCAACTATATCATACGTGGCAAAGAGGTGCTTATCGTGGATGAGTTTACTGGTCGAGTTATGCAGGGGAGGAGATGG AGTGATGGACTTCACCAAGCAGTTGAAGCAAAGGAAGGTTTGCCAATTCAAAATGAAACTCTAACCCTGGCATCAATCAGCTACCAGAACTTCTTTCTCC AGTTCCCAAAACTTTGTGGAATGACTGGCACTGCAGCGACTGAAAGTACAGAGTTTGAAAGTATTTACAAACTTAAAGTTACAATTGTGCCTACAAACAA GCCCATGATGAGAAAGGACGAGTCCGATGTAGTTTTCAGGGCAACTTCCGGAAAATGGCGAGCAGTTGTTGTAGAAATTTCTAGAATGAACAAGACAGGT CGACCCGTCCTTGTCGGTACAACAAGTGTTGAGCAGAGTGATGCACTAGCAGGACAGTTGCTAGAAGCTGGAATTCCGCATGAGGTTCTCAATGCAAAAC CAGAGAATGTAGAGAGAGAAGCGGAAATTGTGGCACAGAGTGGTCGTGTAGGAGCAGTGACAATCGCTACAAATATGGCAGGTCGTGGAACAGATATAAT TCTCGGTGGAAATGCAGAATTTATGGCCAGGTTGAAGCTACGTGAGATGCTTATGCCAAGAGTTGTTAGGCCAGCTGAAGGAGTTTTTGTATCAGTGAAG AAATCCCTTCCTCAGAAGACATGGAAGGTGAATGAAAGTTTATTTCCATGCAAACTATCCAATGAGAATACTAAATTGGCCGAGGAAGCAGTACAATTGG CTGTAGGATCTTGGGGCCAAAGATCATTAACTGAGCTTGAAGCAGAGGAGCGTCTATCTTACTCCTGTGAAAAGGGCCCTGCTCAGGATGAAGTCATAGC CAAGTTGCGTAGTGCATTTTTAGAAATTGTTAAAGAATTTAAGGAGTACACTGAGGAAGAAAGGAAGAAGGTTGTGTCTGCTGGTGGATTACATGTGGTG GGAACAGAAAGGCATGAATCCCGCCGGATTGATAATCAGCTTCGTGGTCGAAGTGGTCGCCAAGGGGATCCTGGAAGTTCCCGCTTCTTCCTAAGTCTTG AAGATAACCTCTTTAGGATTTTTGGAGGAGACCGAATCCAGGGTTTGATGAGAGCTTTTAGAGTTGAAGACCTACCAATTGAGTCCAATATGTTGACGAA ATCACTAGATGAAGCTCAGAGGAAAGTGGAGAACTATTTTTTTGATATCAGGAAGCAACTATTTGAGTATGATGAAGTTCTGAACAGCCAGAGAGACCGT GTTTATACCGAGAGAAGGCGAGCCCTTGAATCTGACAACCTCCAGTCTCTTATTATTGAATATGCTGAACTGACAATGGATGACATCTTAGAGGCGAATA TTGGTTCTGATGCTCTGGTGGGAAGTTGGGATCTTGAAAAGCTTATTGCAAAAGTTCAGCAGTACTGCTATTTGCTAAATGATTTGACTCCAGATTTGCT GCGAAGTAAGTGTTCAAGTTACGAAGATTTGCAGGATTACCTTCGTCTTCGTGGTCGTGAAGCATATTTACAGAAAAGGGATATTGTGGAGAAAGAAGCG CCCAGCTTGATGAAGGAAGCTGAGAGGTTCTTGATTTTGAGCAATATTGACCGCTTGTGGAAGGAACATTTACAAGCAATCAAGTTCGTTCAGCAAGCTG TAGGCTTACGTGGCTATGCACAGCGCGATCCTCTTATTGAGTACAAGCTTGAAGGCTACAATCTGTTCCTGGAGATGATGGCTCAGATAAGAAGAAATGT TATATACTCCATATATCAGTTCCAACCTGTGATGGTAAAGAAAGACCAGGAACAAAGCCAGAATGACAAATCAACCAAAGTTGTCAGAAATGGTAGGGGT GGTAAGAAAAAACCCAATCCAGTTGGCACCACGGAGCCGTCATCAGCTGCCAGCCCTCAGGCTAGTGCCTAA
AA sequence Show only first row Show all	>Potri.014G112266.2 pacid=42763282 polypeptide=Potri.014G112266.2.p locus=Potri.014G112266 ID=Potri.014G112266.2.v4.1 annot-version=v4.1 MAAPPLVKHSTSISSFPSNSLLLPHQDFYKKTNPCSSFFGENSLNMLNYGAKTSRLVSNTRRKMCAVASLGGLLGGIFKGTDTGESTRKQYAPTVSLINQ LEAEISALSDSQLRDKTAALKERAQLGESLDSLLPEAFAVVREASKRVIGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHIVT VNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTSEQRRENYMCDITYVTNSELGFDYLRDNLAMTVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAE KPSDRYYKAAKIATAFERDIHYTVDEKQKTVLLTEQGYGDTEEILDVKDLYDPREQWASYILNAIKAKELFLRDVNYIIRGKEVLIVDEFTGRVMQGRRW SDGLHQAVEAKEGLPIQNETLTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYKLKVTIVPTNKPMMRKDESDVVFRATSGKWRAVVVEISRMNKTG RPVLVGTTSVEQSDALAGQLLEAGIPHEVLNAKPENVEREAEIVAQSGRVGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRVVRPAEGVFVSVK KSLPQKTWKVNESLFPCKLSNENTKLAEEAVQLAVGSWGQRSLTELEAEERLSYSCEKGPAQDEVIAKLRSAFLEIVKEFKEYTEEERKKVVSAGGLHVV GTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLFRIFGGDRIQGLMRAFRVEDLPIESNMLTKSLDEAQRKVENYFFDIRKQLFEYDEVLNSQRDR VYTERRRALESDNLQSLIIEYAELTMDDILEANIGSDALVGSWDLEKLIAKVQQYCYLLNDLTPDLLRSKCSSYEDLQDYLRLRGREAYLQKRDIVEKEA PSLMKEAERFLILSNIDRLWKEHLQAIKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVMVKKDQEQSQNDKSTKVVRNGRG GKKKPNPVGTTEPSSAASPQASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	0	1
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	1.41	0.9808	RSH1.2
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	2.44	0.9748
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.008G172700 [exp]	4.24	0.9701	GATB.1
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.011G140100 [exp]	4.47	0.9739
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.019G040100 [exp]	4.89	0.9549
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	5.47	0.9704
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.002G068400 [exp]	6.48	0.9444
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.015G093600 [exp]	6.92	0.9498
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	9.94	0.9634
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	10.90	0.9648

Compare expression of checked genes

Potri.014G112266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.