Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62130 682 / 0 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G26600 551 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G08490 56 / 3e-08 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187200 [exp] 850 / 0 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G003000 [exp] 610 / 0 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.013G002400 [exp] 601 / 0 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.009G066000 [exp] 62 / 3e-10 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038033 [exp] 681 / 0 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10009974 [exp] 680 / 0 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031445 [exp] 551 / 0 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10001514 [exp] 549 / 0 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031670 [exp] 60 / 2e-09 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00266 [poplar] [flax] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Potri.014G112700.1 pacid=42762491 polypeptide=Potri.014G112700.1.p locus=Potri.014G112700 ID=Potri.014G112700.1.v4.1 annot-version=v4.1 ATGGAAGGAGCCAAAGACCCTCGAAACGGCGGCGATTCGTCGCCAAAGCAGGTCTCCAAAAAACCTCGCACCAGTGGCCACATAACAGAACAGGAAATCC ACGAAGAATTCTCTCACCATAATCTTAACGTAGCCAGAATTAACAACGGTAGCTTCGGTAGCTGCCCCGGATCTGTACTCGCTGCTCAAAAAAACTGGCA GCTTCAGTTCCTTCAACAACCCGACGACTTCTACTTCAATACTCTCCGAAAAGGAATTCTCCACTCACGTACTGTCATAAAAAACCTCATCAACGCTGAT GATGTCGATGAAATCTCCCTCGTCGATAACGCCACCACTGCGGCCGCCATCGTCCTTCAACAAATTGGCCGTGCCTTCGCTGAAGGTAAGTTTGCTAAAA ACGATACCGTTTTAATGCTCCACTGTGCTTACGAAGCGGTTAAGAAATCCATTCAAGCTTACGTCACGCGTGCCGGGGGTTCTGTTATTGAGGTTCAGTT ACCGTTTCCGGTTAATTCGAATGAGGAGATAATTGCGGAGTTTAAGAGAGGATTAGGAAAAGGCAAAGCTAACGGTAGAAAGATTAGGTTAGCGATAATT GATCATATAACGGCGATGCCGTGTGTTGTTATTCCGGTTAAGGAGTTGGTTAAAATTTGTAGAGAAGAAGGCGTGGAGCAGGTTTTTGTTGATGCAGCTC ATGCTATTGGCAGTGTTGATATAAATGTTAAAGAAATCGGGGCTGATTTTTACGTTAGTAATCTGCACAAGTGGTTTTTTTGTCCGCCATCAGTTTCATT TCTGTATTGCAAGAAAGCGAGTTTGGAATTTGATGTGCATCATCCGGTTGTTTCACATGAGTACGGAAATGGATTGCCGATTGAGAGTGCCTGGGTTGGG ACTAGGGATTATAGCTCGCAATTAGTGGTGCCGGCGGCTTTGGAGTTTGTTAATCGGTTTGAGGATGGAATTCATGGGATAATGAAGAGGAACCATGAGG AGGTTGTTAAGATGGGGAAAATGTTGGCGGAATCATGGAGGACAAATCTTGGTTCTCCGCCGGAGATGTGTGCAGGAATGATCATGGTTGGTTTGCCTTC AAGATTGAGTGTTTCAAGTGAAGATGATGCTTCGAGGTTAAGGTCGCACTTGCGTGACTGTCATGGGGTTGAGGTTCCAATACACTATCAGGGTTTAAGA GATGGTGAGGAGGGGGTGAAAGATAAGGATGGTGTTATAACAGCATATGCAAGGATTTCTCATCAGATTTATAACAAGTTTGAGGATTATTGCAGGTTTA GGGATGCTGTAAATCATCTTGCTGAGAATCGACAGATTCGCAGAACTATTTCTCCAGAGTGA
AA sequence Show only first row Show all	>Potri.014G112700.1 pacid=42762491 polypeptide=Potri.014G112700.1.p locus=Potri.014G112700 ID=Potri.014G112700.1.v4.1 annot-version=v4.1 MEGAKDPRNGGDSSPKQVSKKPRTSGHITEQEIHEEFSHHNLNVARINNGSFGSCPGSVLAAQKNWQLQFLQQPDDFYFNTLRKGILHSRTVIKNLINAD DVDEISLVDNATTAAAIVLQQIGRAFAEGKFAKNDTVLMLHCAYEAVKKSIQAYVTRAGGSVIEVQLPFPVNSNEEIIAEFKRGLGKGKANGRKIRLAII DHITAMPCVVIPVKELVKICREEGVEQVFVDAAHAIGSVDINVKEIGADFYVSNLHKWFFCPPSVSFLYCKKASLEFDVHHPVVSHEYGNGLPIESAWVG TRDYSSQLVVPAALEFVNRFEDGIHGIMKRNHEEVVKMGKMLAESWRTNLGSPPEMCAGMIMVGLPSRLSVSSEDDASRLRSHLRDCHGVEVPIHYQGLR DGEEGVKDKDGVITAYARISHQIYNKFEDYCRFRDAVNHLAENRQIRRTISPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.014G112700 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	3.31	0.9069
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.004G204300 [exp]	4.47	0.9011	IDH1.1
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	8.12	0.8823
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	8.48	0.8738
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	10.19	0.8631
AT3G57990			unknown protein		Potri.003G088500 [exp]	11.87	0.8976
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	12.12	0.8778
					Potri.001G078409 [exp]	12.40	0.8530
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	13.56	0.8846
AT5G13520			peptidase M1 family protein (....		Potri.010G215700 [exp]	14.69	0.8632

Compare expression of checked genes

Potri.014G112700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.