Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 382 / 8e-122 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT4G01820 377 / 1e-120 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT1G02520 372 / 2e-118 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 372 / 2e-118 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 356 / 2e-112 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT2G47000 351 / 2e-110 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G18050 327 / 7e-102 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 308 / 9e-95 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28860 227 / 7e-66 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 222 / 3e-64 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113100 [exp] 557 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.002G187500 [exp] 462 / 2e-152 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 445 / 1e-145 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 444 / 2e-145 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 404 / 3e-130 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 398 / 5e-128 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 347 / 5e-109 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 340 / 3e-106 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.017G081100 [exp] 231 / 3e-67 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009988 [exp] 407 / 3e-131 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 404 / 3e-130 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 379 / 1e-120 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 375 / 2e-119 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010068 [exp] 358 / 7e-113 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10004520 [exp] 348 / 7e-113 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010012 [exp] 356 / 1e-112 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 318 / 2e-98 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010074 [exp] 305 / 4e-93 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004583 [exp] 275 / 1e-82 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.014G113400.2 pacid=42763879 polypeptide=Potri.014G113400.2.p locus=Potri.014G113400 ID=Potri.014G113400.2.v4.1 annot-version=v4.1 ATGCAATGTAAGGCTATAAATGCCAACGTTAATTTTAATAGAGGGTACGAATTATATCCTAATCCCCTGAATCTTCTCTGTTATTCTTCCTCCATAAATT CTTTGTATCAGAAAAGTTCAGGCCCGAATAAGGAACTAGAAAAGCAAGAGAGGAGCAAAGAAGATGAGAAAACTAAAACTGTGCCATTCCCCAAGCTCTT TTCTTTTGCAGATTCCACAGATACTGTTTTGATGATCATTGGCTCGATTGGTGCTGTTGGAAATGGAATATCTTTGCCCCTTATGTCAATTCTATTGGGA GACGTGATTAATTCTTTCGGACAAAATCAGCATAATGAAAATGTGGTGCATTTAGTGTCCAAGGTATCTCTCAAATTTGTCTACTTGGCAGTGGGGTCTG GTGTAGGATCATTTCTGCAGGTGGCTTGCTGGATGGTCACGGGAGAGAGGCAGGCTGCTGGGATAAGGGGTACATATTTGAAAACTATACTAAGACAAGA TGTTGCTTTTTTTGACAAGGAAACAAACACCGGAGAGGTTGTTGGTAGAATGTCTGGTGACACTGTTCTTATACAAGATGCCATGGGTGAAAAGGTTGGG AAATTTATACAGCTGCTATCAACATTCTTTGGAGGCTTTGCAATAGCATTTGTCCAAGGATGGCTTCTTACTCTAGTCATGTTATCTTCCATTCCCCTGA TTGTGATAGCTGGTGCGGCCATGTCAATAATGATATCTAGGAAAGCATCTCTTGGACAAACTGCTTATGCAAAAGCAGCAATTGTCGTTGAACAGACACT TGGCTCGATCAGAACTGTCGCGTCATTTACTTGTGAAGAGCAAGCCATAAGCAATTACCAGAAGTTTCTCATTACTGCTTACAAATCCGGGGTTCAAGAA GGCTTAGCAGCTGGATTGGGTATTGGCATTGTTATGTTAGTAATCTTCAGAACTGTATGTGATATTCAGATAGCCGTTAATCATGTATTCTATCAGCGTA CAAAACATATCGAAGTTAATTGTCATTCCATACGTGAATCCTTTGACCAACATGTGATTATTTTTTCTCACATTTCCCCCGAACATCAAACTTCAGACAT CTTCACTAAAACTCTTTCTCGGCATCGACATCAGTTCTTGGTTGACAAATTAATGCTTCTTGATCTACTAGTATTAATTTGA
AA sequence Show only first row Show all	>Potri.014G113400.2 pacid=42763879 polypeptide=Potri.014G113400.2.p locus=Potri.014G113400 ID=Potri.014G113400.2.v4.1 annot-version=v4.1 MQCKAINANVNFNRGYELYPNPLNLLCYSSSINSLYQKSSGPNKELEKQERSKEDEKTKTVPFPKLFSFADSTDTVLMIIGSIGAVGNGISLPLMSILLG DVINSFGQNQHNENVVHLVSKVSLKFVYLAVGSGVGSFLQVACWMVTGERQAAGIRGTYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVG KFIQLLSTFFGGFAIAFVQGWLLTLVMLSSIPLIVIAGAAMSIMISRKASLGQTAYAKAAIVVEQTLGSIRTVASFTCEEQAISNYQKFLITAYKSGVQE GLAAGLGIGIVMLVIFRTVCDIQIAVNHVFYQRTKHIEVNCHSIRESFDQHVIIFSHISPEHQTSDIFTKTLSRHRHQFLVDKLMLLDLLVLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113400 [exp]	0	1
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159200 [exp]	2.00	0.9511
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Potri.014G113100 [exp]	2.44	0.9694
AT1G03700			Uncharacterised protein family...		Potri.019G100300 [exp]	6.00	0.9491
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G452600 [exp]	6.32	0.9229
AT5G41380			CCT motif family protein (.1)		Potri.001G101200 [exp]	7.48	0.9229
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.005G148400 [exp]	8.24	0.9114
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	9.16	0.9431
AT4G03230			S-locus lectin protein kinase ...		Potri.013G150800 [exp]	10.39	0.9335
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.014G175000 [exp]	11.18	0.9349	Pt-ZOG1.11
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.016G058200 [exp]	14.42	0.9136	HPOX14.2

Compare expression of checked genes

Potri.014G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.