Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62160 525 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G41040 191 / 4e-56 HXXXD-type acyl-transferase family protein (.1.2) AT2G23510 184 / 2e-53 SDT spermidine disinapoyl acyltransferase (.1) AT1G28680 181 / 3e-52 HXXXD-type acyl-transferase family protein (.1) AT5G07080 177 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT2G25150 169 / 8e-48 HXXXD-type acyl-transferase family protein (.1) AT5G17540 167 / 5e-47 HXXXD-type acyl-transferase family protein (.1) AT3G48720 165 / 2e-46 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT3G03480 165 / 4e-46 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT3G47170 160 / 3e-44 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074500 [exp] 195 / 2e-57 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 194 / 7e-57 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 193 / 1e-56 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 193 / 2e-56 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 191 / 7e-56 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 189 / 5e-55 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 187 / 2e-54 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 187 / 4e-54 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) Potri.015G100800 [exp] 182 / 7e-53 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004527 [exp] 528 / 0 AT3G62160 452 / 8e-158 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 193 / 1e-56 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10035189 [exp] 186 / 3e-54 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10020332 [exp] 186 / 9e-54 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 180 / 6e-52 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 180 / 7e-52 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 176 / 3e-50 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 178 / 4e-50 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10020330 [exp] 174 / 2e-49 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 173 / 5e-49 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.014G113600.1 pacid=42763548 polypeptide=Potri.014G113600.1.p locus=Potri.014G113600 ID=Potri.014G113600.1.v4.1 annot-version=v4.1 ATGCCCATGGTTTTCTCCGTAATCAGATCAAGCCGAGGCCTGATTAGGCCGCTTGAGCGGACACCATCCGGCATTCTTGATCTCTCAGTCATTGACAGAT TGCCTGTGCTAAGATGCAATGCTCGAACACTACACGTGTTTAGGCACGGTCCTGAAGCAGCACAGGTGATCAAAGAAGCCCTGTCCAAGGCATTGGTTCC GTATTATCCTCTTGCAGGATGGCTTAAAGAGTCCAGCCAGGGTCAGCTTCAAATCGAATGTTCTGCACAAGGTGTATGGTTCGTTGAGGCATCAGCTAAT TGTACTCTCGACACTGTTAGTTACTTTGATAATGTCATGTCTATCCCCTATGATGATCTGCTTCCGGATTATGTTCCTGAAACTGAAGGGACAGAACCTC TTGTGCAAATGCAGGTTACTCAATTTGAATGTGGGGGTTTTGTGATTGGACTCATATTCTGCCACGCTATCTGTGATGGCCTTGGTGCTGCGCAATTCCT CAACGCTGTTGGGGAGAATGCTAGAGGCCTTGAGCATCCAAGCACTACGCCAGTGTGGTGTAGAGACTTTTGTCCGCTCCCACCCCAGCAAGAAAAGATG AATACCTTGCCAAAACTACCACCAGCAATGCCCAATTACAGGCTACAGCATGCCAACATAGACATTTCTCTTGATCAAATTAAACAAGTCAAGACAGAAT TTCATGATTCAACTAGTCAAATGTGCTCCACATTTGAAGCCGTCGCGGCCACATTTTGGAAATTCCGAACTCTAGCTGTAAACTTCGAGCAAAATACTGA GGTCAAGCTTGTTTTCTTTGCAAATTGTCGTCAGCTCTTGGAACCTCCGTTGCCTAAAGGATTCTATGGCAACTGTTTCTTCCCAGTGACAATCACAACT TCAAGTGAGACGCTAGCACAGGCATCAAATGTTGAGGTGATAAAGCTAATACAAGAAGCAAAAGGTAATCTACCAGTAGAATTCTCCAAGTATTTGAAGG GTGACTATATGAAAAATGGAGAGGACCCGTTTGCACCACCGCTAATCTACACCACTCTGTTTATATCAGAATGGGGCAGATTAGGATTCAATCAGGTGGA TTATGGATGGGGTCCTCCAGTTCACATTGTTCCCATTCAAGGGTCCAGCATTATTCCTGTTGGCATTGTTGGATCACTGCCATTGCCGAAGAAAGGCATC CGTTTGATGACATGGTGTGTCGAAGAGGTCCATCGCCAACCATTCATCGATCAAATGGTGAAAGTTATTTGA
AA sequence Show only first row Show all	>Potri.014G113600.1 pacid=42763548 polypeptide=Potri.014G113600.1.p locus=Potri.014G113600 ID=Potri.014G113600.1.v4.1 annot-version=v4.1 MPMVFSVIRSSRGLIRPLERTPSGILDLSVIDRLPVLRCNARTLHVFRHGPEAAQVIKEALSKALVPYYPLAGWLKESSQGQLQIECSAQGVWFVEASAN CTLDTVSYFDNVMSIPYDDLLPDYVPETEGTEPLVQMQVTQFECGGFVIGLIFCHAICDGLGAAQFLNAVGENARGLEHPSTTPVWCRDFCPLPPQQEKM NTLPKLPPAMPNYRLQHANIDISLDQIKQVKTEFHDSTSQMCSTFEAVAATFWKFRTLAVNFEQNTEVKLVFFANCRQLLEPPLPKGFYGNCFFPVTITT SSETLAQASNVEVIKLIQEAKGNLPVEFSKYLKGDYMKNGEDPFAPPLIYTTLFISEWGRLGFNQVDYGWGPPVHIVPIQGSSIIPVGIVGSLPLPKKGI RLMTWCVEEVHRQPFIDQMVKVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62160			HXXXD-type acyl-transferase fa...		Potri.014G113600 [exp]	0	1
AT5G07800			Flavin-binding monooxygenase f...		Potri.012G067500 [exp]	1.00	0.8472
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.016G113300 [exp]	2.44	0.8260
AT5G18460			Protein of Unknown Function (D...		Potri.013G050100 [exp]	6.32	0.7951
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Potri.005G256000 [exp]	9.00	0.8021	XCP2.1
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	10.67	0.7727
AT5G40020			Pathogenesis-related thaumatin...		Potri.017G075500 [exp]	13.07	0.7520
AT1G58070			unknown protein		Potri.004G222800 [exp]	14.96	0.7608
AT5G11540			D-arabinono-1,4-lactone oxidas...		Potri.018G039600 [exp]	15.42	0.7242
AT5G03260		LAC11	laccase 11 (.1)		Potri.007G023300 [exp]	15.81	0.7031
AT3G61490			Pectin lyase-like superfamily ...		Potri.003G131700 [exp]	16.97	0.7547

Compare expression of checked genes

Potri.014G113600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.