Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17450 945 / 0 hAT dimerisation domain-containing protein (.1) AT4G15020 333 / 1e-101 hAT transposon superfamily (.1.2) AT3G22220 319 / 3e-96 hAT transposon superfamily (.1.2) AT1G79740 286 / 6e-85 hAT transposon superfamily (.1) AT3G13020 250 / 2e-72 hAT transposon superfamily protein (.1) AT3G13030 223 / 4e-63 hAT transposon superfamily protein (.1.2.3) AT3G13010 180 / 5e-48 hAT transposon superfamily protein (.1) AT5G33406 166 / 1e-43 hAT dimerisation domain-containing protein / transposase-related (.1) AT1G43260 157 / 1e-42 hAT transposon superfamily protein (.1) AT1G36095 100 / 6e-23 DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188400 [exp] 1676 / 0 AT3G17450 960 / 0.0 hAT dimerisation domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000517 [exp] 54 / 4e-08 AT4G15020 122 / 8e-33 hAT transposon superfamily (.1.2) Lus10016942 [exp] 49 / 3e-06 AT3G17450 51 / 1e-07 hAT dimerisation domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0361 [poplar] [flax] PF04937 [poplar] [flax] DUF659 Protein of unknown function (DUF 659) CL0361 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region
Representative CDS sequence Show only first row Show all	>Potri.014G114100.1 pacid=42762838 polypeptide=Potri.014G114101.1.p locus=Potri.014G114100 ID=Potri.014G114100.1.v4.1 annot-version=v4.1 ATGTTTGAAGAAATGGCTCCACTTCGGTCCTCAGGATATATTGATCCTGGATGGGAGCATGGCATTGCTCAAGATGAAAGAAAGAAGAAGGTCAAATGCA ACTACTGTGGGAAAATAGTCAGTGGTGGAATATTCAGGTTGAAGCAACATTTAGCTAGAATGTCTGGTGAAGTTACTCACTGTGTTAAGGTTCCTGAGGA AGTATGCTTCAATATGAGAAAAAACCTGGAAGGATGCCGTTCAGGTCGAAAACGAAGGCAAACTGAATATGAACAGGCACCTTTAGCTTTCCACTCTAAT GAATATGATGACATGGAAGAAGCTTCTTGTAGTTACAAACAAAAAGGCAAAAGGGTGGTGGGTGACAAGAACTTGGTTATAAGGTTTGCTTCTCTTCGAT CCTTAGGATATGTGGACCCGGGCTGGGAACACTGTGTTGCTCAAGATGAAAAGAAGAAAAGGGTGAAGTGCAACTACTGTGAAAAAATTATTAGTGGAGG CATAAACCGATTTAAACAACATCTGGCTAGGATCCCTGGGGAAGTTGCCTACTGTGACAAGGCACCTGAGGAAGTGTACCTTAGAATCAAGGAGAACATG AAATGGCACCGTACTGGAAGAAGGAATCGGAAACTTGAATCTAAAGATATATCCACTTTCTATACCAACTCAGACAATGAGGATGAAGAGGAGGAACATG AGGGAGGGTTGTTGCAATATTCAAGTAAAGATTTGCTGGTCATTGATGATAAATTTTCTGACAATGACATCAGAAATAACATCAAGGGGAGGTCCCCTGG TAGCAGCAGCAATGGTGCTGAACCACCAATGAAAAGATCAAGATTGGATTCAGTGTTTTTGAAGTCTCTTAAAAGCCAAACATCATCACACTACAGGCAA ACAAAAGCAAAGATGGGTTTTGAGAAGAAAGCTCGAAAGGAAGTGATCTCTGCCATCTGCAAATTCTTTTATCATGCAGGATTGCCTTCAAATGCAGCAA ATTCCCCATATTTCCACAAAATGCTGGAGTTGGTTGGCCAGTATGGGCCAGGTCTGCAAGGTCCTTCCAGCCGACTGATATCTGGTCGATTTCTTCAGGA TGAGATCACTACCATTAAAGAGTATCAAGAAGAATTTAAGGCATCTTGGATGATTACTGGTTGTTCTATTGTGGCTGATAGTTGGAATGATCTCCAGGGT AGGACATCAATAAACCTTTTGGTCTGTTGTCCCCGAGGTGTATATTTTGTTTCTTCTGTTGATGCCACTGATATAATAGAAGATGCCGCCAGCCTTTTCA AGTTGTTGGACAAGGTGGTGGAAGAGATTGGTGAGGAAAATGTTGTTCAGGTAATCACTAAGAACACTGCCAGTTTTAAGGCCGCTGGGAAGATGCTAGA AGAGAAAAGGAGAAATTTATTTTGGACACCATGTGCTATCCATTGCATTGATCAAATGGTAGAGGATTTTTTGAATATAAAATGGGTAGGAGAGTGCGTA GATAAAGCTAAAAGAGTTACAAGGTTCATTTACAACAATACTTGGTTGTTGAATTATATGAAGAAAGAGTTCACAAAGGGACAGGAACTTCTCAGGCCAA CTGTTACTAAATATGGCACTACATTCTTCACTTTACAAAGTTTTTTGGACCAAAGGGTGGGTCTTAAGAGAATGTTCCAATCAAATAAATGGATATCCTC TCGATTTACCAAATCAGATGATGGTAGAGAAGTCGAAAAAATTGTCTTAAATTCCACATTCTGGAAGAAGATACAGTATGTGATAAAATCTTTAGAACCA GTTGCACTTGTTCTTCAGAAGATAGATAGTGATGAAACCCAATCAATAGCACATATATATAATGACATGTGTAGAGCTAAACATGCAATTAAAGCTATTC ATGGGGATGATGCACGAAAATATGGACCTTTCTGGAGCGTGATAGAAAACCAATGGAGCTCCTTGTTTCACCACCCTCTTTATGTGGCTACTTACTTTCT TAATCCATCTTACCGCTATCGTCCTGATTTCCTATTGAATCCTGAGGTTATTCGTGGCCTAAATGAATGCATTGTTCGATTAGAAGCTGACACCGGGAAA AGAGTTTCTGCATCCATGCAGATACCTGATTTTGTGTCTGCCAAAGCGGATTTTGGAACTGATTTGGCTATAAGTACTAGAATGGAGCTCAATCCAGCTG CATGGTGGCAGCAACATGGGATAAATTGCTTGGAGCTTCAACGAATTGCCATTCGCATGCTAAGCCAGACATGCTCATCTCTTGTATGTGAACACACGTG GAGTATATATGATCAAGTTCATAGTAAAAGGCATAGTAGTGTGTCTAGGAAGAGATGGAATGAGCTTACCTATGTCCATTACAATTTGCGACTAAGAGAA CGACAACAAGGAAGAAAGCCTGGTGATGTGATCTCATTTGACAACTTAATTACAGAAAACATACTGGATGACTGGCTTGTGGAGTCAGACAAACAACCCA TGCAAGAAGACGAGGAGATCCTTTATAATGAGATGGAACAATTTGATGGAGACGTAATGGATGAGAATGACCATCAAGAAAAGAGACCTGCAGATATGGT GACATTGGCAGGGGGGGTACTTGAGCCTTTGGATGTTATTCCTGCTGCCGGAGGAGTTACCACAGAAGATGACGGTCTTGATTTTCTTGATGATGATTTG ACAGATTAG
AA sequence Show only first row Show all	>Potri.014G114100.1 pacid=42762838 polypeptide=Potri.014G114101.1.p locus=Potri.014G114100 ID=Potri.014G114100.1.v4.1 annot-version=v4.1 MFEEMAPLRSSGYIDPGWEHGIAQDERKKKVKCNYCGKIVSGGIFRLKQHLARMSGEVTHCVKVPEEVCFNMRKNLEGCRSGRKRRQTEYEQAPLAFHSN EYDDMEEASCSYKQKGKRVVGDKNLVIRFASLRSLGYVDPGWEHCVAQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVAYCDKAPEEVYLRIKENM KWHRTGRRNRKLESKDISTFYTNSDNEDEEEEHEGGLLQYSSKDLLVIDDKFSDNDIRNNIKGRSPGSSSNGAEPPMKRSRLDSVFLKSLKSQTSSHYRQ TKAKMGFEKKARKEVISAICKFFYHAGLPSNAANSPYFHKMLELVGQYGPGLQGPSSRLISGRFLQDEITTIKEYQEEFKASWMITGCSIVADSWNDLQG RTSINLLVCCPRGVYFVSSVDATDIIEDAASLFKLLDKVVEEIGEENVVQVITKNTASFKAAGKMLEEKRRNLFWTPCAIHCIDQMVEDFLNIKWVGECV DKAKRVTRFIYNNTWLLNYMKKEFTKGQELLRPTVTKYGTTFFTLQSFLDQRVGLKRMFQSNKWISSRFTKSDDGREVEKIVLNSTFWKKIQYVIKSLEP VALVLQKIDSDETQSIAHIYNDMCRAKHAIKAIHGDDARKYGPFWSVIENQWSSLFHHPLYVATYFLNPSYRYRPDFLLNPEVIRGLNECIVRLEADTGK RVSASMQIPDFVSAKADFGTDLAISTRMELNPAAWWQQHGINCLELQRIAIRMLSQTCSSLVCEHTWSIYDQVHSKRHSSVSRKRWNELTYVHYNLRLRE RQQGRKPGDVISFDNLITENILDDWLVESDKQPMQEDEEILYNEMEQFDGDVMDENDHQEKRPADMVTLAGGVLEPLDVIPAAGGVTTEDDGLDFLDDDL TD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	0	1
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	1.41	0.8830
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	2.00	0.8773	Pt-SPL1.4
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	3.60	0.8502
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Potri.006G220000 [exp]	4.24	0.8763
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	4.47	0.8744
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	4.69	0.8569
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	5.29	0.8663
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.005G193100 [exp]	5.47	0.8468
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.001G008800 [exp]	7.48	0.8481
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	8.66	0.8327

Compare expression of checked genes

Potri.014G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.