Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60030 962 / 0 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT2G47070 951 / 0 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G20980 266 / 1e-74 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 237 / 7e-65 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G15270 129 / 3e-34 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT2G33810 125 / 2e-33 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 122 / 1e-31 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G02065 125 / 5e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT5G43270 126 / 1e-30 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G69170 125 / 1e-30 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188700 [exp] 1650 / 0 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G098600 [exp] 1043 / 0 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 1009 / 0 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.005G258700 [exp] 301 / 1e-86 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G002400 [exp] 294 / 5e-84 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.010G026200 [exp] 140 / 5e-34 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.015G098900 [exp] 134 / 1e-33 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G398200 [exp] 128 / 2e-33 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.004G046700 [exp] 126 / 2e-33 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038043 [exp] 1062 / 0 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 1048 / 0 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 827 / 0 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 635 / 0 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10016275 [exp] 128 / 3e-32 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 128 / 6e-31 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10003126 [exp] 124 / 7e-31 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 124 / 8e-31 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10005548 [exp] 119 / 2e-30 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10015764 [exp] 124 / 3e-30 AT5G50670 160 / 2e-45 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.014G114300.1 pacid=42764219 polypeptide=Potri.014G114300.1.p locus=Potri.014G114300 ID=Potri.014G114300.1.v4.1 annot-version=v4.1 ATGGAGGCTAGATTTGGAGGTGAAGCTCATCATTTCTATGCTACGCCCCCCTCCGATATGCGGACAGTAGGGAAGAGAGGTTTAGAATGGGATTTGAATG ATTGGAAATGGGATGGCGATCTTTTTATTGCAAGCCCTTTGAATCCGGTACCATCAACCGGTATCAGTAGGCAGTTTTCCTCTCATGGGGTCGGGACAGG AATTCTGGCCACCGGTAATTCGTCCAACAGTTCATCCTCATGCTCCGATGAAGTGAATCTGGGAGCTGAGAAAGGAAAGAGGGAATTGGAGAAAAGGAGA AGGGTTGTTGTCATTGATGATGACAATTTGAATGATCGAGAAACTGGTGGCCTTAGTTTGAAGCTTGGTGGTGAAAGGGATGCAGGGAATTGGGAGGGAA GCATCGGAAAGAAGACGAAATTAGTTGGGAGTGGCTTGAGCCGTGCAGTTTGTCAGGTGGAGGATTGTGGGGTTGATCTGAGCAATGCCAAGGATTATCA CAGGAGGCATAAGGTTTGCGAGATGCATTCCAAGGCTAGCAAAGCTCTCGTGGGAAATGCTATGCAGCGTTTCTGTCAGCAGTGCAGTAGGTTTCATGTC CTTCAAGAGTTCGATGAAGGAAAGAGAAGTTGTCGTAGACGTCTGGCTGGCCATAATAAAAGGAGGAGGAAGACAAATCCTGATACTGTTGGCAATGGAA GTTCGATGAATGATGATCAGACCAGTGGCTATCTGTTGATAAGTCTCTTGAGGATACTCTCAAACATGCATTCCAACAGGTCAGACCAGACAACTGATCA GGATCTGTTATCTCATCTTTTAAGGAGCCTTGCAAGCCATGACGTTGAACATAGAGGAGGAAACATCTTTGGACAATTGCAGGAACCTCGAGATTTGAGC ACATCATTTGGAAACTCAGCGGTAGATTCAACTTTACTCTCAAATGGTGAAGGACCCTCAAAGCCTTTAAAACAGCACCTGACAGTACCTATGTCTGGTA TGCCGCAACAAGTTAAGCATTTGCATGATGCTAATGGTGCAAACATACAGACCGCATCTTCCTTGAAACCTAGCATCCCAAACAACTTTGCAACGTATTC AGAAGTTCGAGAGAGTACAGCAGGACAGGTCAAGATGAACAACTTTGATTTGAATGACATTTATATTGACTCAGATGATGGCATTGAAGATATAGAGAGA TCACCTGCTCCTGTGAATGCAATGACTAGCTCCCTTGATTGCCCTTCATGGGTACAACAAGACTCCCGTCAGTCGAGTCCTCCTCAGACAAGTGGAAATT CAGATTCAGCTTCCGCACAGTCACCTTCTAGTTCCAGTGGAGAAGCTCAGAGCCGCACAGATCGAATAGTTTTTAAATTATTTGGGAAAGAACCAAATGA TTTTCCTTTTGTCCTGCGTTCCCAGATTCTGGACTGGCTATCTCATAGTCCCACTGATATTGAAAGCTACATTAGGCCTGGCTGTATCATTCTGACCATT TATCTTCGTCAGGCTGAGGCTGCATGGGCGGAACTTTGCTGTGATCTTGGCTCCAGTTTGAGCAGGCTTCTGGATGTATCGGACAACACTTTCTGGAGAA CTGGATGGGTCTACATTAGGGTGCAAAATCAGATAGCATTTGTTTATAATGGTCAGGTTGTTGTTGATACATCCTTACCTCTCAGAAGCAACAACTATAG CAAAATTTTGAGTGTCAAGCCAATTGCCATATCTGCATCTGAGAAAGCTAAATTTTGTATTAAGGGCATCAACTTGTCTCGGCCTGCCACAAGATTACTC TGTGCGGTAGAAGGGAACTATATGGTTCAAGATAATGCTCAGGAGTTGATGGATGATGTTGGTAGCTTCAAAGGTCATGATGAGGTCCAATGTGTGAACT TATCTTGCTCTATCCCCACATTGACTGGAAGAGGATTCATTGAGATCGAAGATCATGGCTTTAGCAGCAGCTTCTTTCCCTTTTTAGTTGCAGAGGAAGA TGTATGTTCAGAGATTCGCATGCTTGAGGGTGCATTGGAGTTTACTGAAACAGATGCAGATTTTGGGGAAACTGAAAAAATGGAAGCCAAAAATCAAGCG ACGGACTTCGTTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAGCTAAAGTCCAGATTGGGCCACTTGAATCCTAGCATGGATCTCTTCCCTTTAAGAA GATTCAATTGGCTCATGGAGTTCTCCATGGACCATGAATGGTGTGCTGTTGTAAGAAAACTCTTGAACATACTGCACAACGGAATTGTTTGTACTGGAGA CCAGTTGTCTCTGAATGAAGCATTATCAGAAATGGGTCTTCTTCACAGAGCTGTGAGGAGGAATTCTAGGTCTCTTGTGGAGCTCCTATTAAGATATGTT CCTGATAAATTTGGATCCAAAGACAAGGCACTGGATGGTGGAAGCCATGAGAGCATTTTGTTTAGGCCAGATGTCATAGGCCCTGCTGGTTTGACACCTC TTCACATTGCAGCTGGTAAAGATGGTTCTGAAGATGTACTGGATGCATTAACTGAAGATCCTGGAATGGTGGGTATTGTAGCATGGAAGAATGCCCGTGA CAGCACAGGCTTCTCGCCTGAAGATTATGCTCGCTTGCGTGGTCACTACTCATACATCCATCTGGTACAAAAGAAAAGTAAGAGACAAGTTGTTGGGCAT GTGGTGCTTGACATCCCTAGCAATCTTTCAAACAGTAACATTGCCATTAACGAGAAGCAAAATGAAGGGTTGACCAGTGGCTTTGAGATTGGACATACAG AATTGAGACCCATTCAGCGCAACTGCAAGCTTTGCAGTCAGAAGGTGGTTTATGGAACAGCCAGCAGGTCTCAGCTGTACAGGCCTGCAATGTTCTCAAT GGTGGCAATTGCTGCGGTTTGTGTCTGTGTGGCTCTTTTATTCAAGAGTTGTCCTGAGGTACTGTATGTGTTCCGTCCATTCAGGTGGGAATTGTTAGAC TACGGAACAAGTTGA
AA sequence Show only first row Show all	>Potri.014G114300.1 pacid=42764219 polypeptide=Potri.014G114300.1.p locus=Potri.014G114300 ID=Potri.014G114300.1.v4.1 annot-version=v4.1 MEARFGGEAHHFYATPPSDMRTVGKRGLEWDLNDWKWDGDLFIASPLNPVPSTGISRQFSSHGVGTGILATGNSSNSSSSCSDEVNLGAEKGKRELEKRR RVVVIDDDNLNDRETGGLSLKLGGERDAGNWEGSIGKKTKLVGSGLSRAVCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHV LQEFDEGKRSCRRRLAGHNKRRRKTNPDTVGNGSSMNDDQTSGYLLISLLRILSNMHSNRSDQTTDQDLLSHLLRSLASHDVEHRGGNIFGQLQEPRDLS TSFGNSAVDSTLLSNGEGPSKPLKQHLTVPMSGMPQQVKHLHDANGANIQTASSLKPSIPNNFATYSEVRESTAGQVKMNNFDLNDIYIDSDDGIEDIER SPAPVNAMTSSLDCPSWVQQDSRQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPFVLRSQILDWLSHSPTDIESYIRPGCIILTI YLRQAEAAWAELCCDLGSSLSRLLDVSDNTFWRTGWVYIRVQNQIAFVYNGQVVVDTSLPLRSNNYSKILSVKPIAISASEKAKFCIKGINLSRPATRLL CAVEGNYMVQDNAQELMDDVGSFKGHDEVQCVNLSCSIPTLTGRGFIEIEDHGFSSSFFPFLVAEEDVCSEIRMLEGALEFTETDADFGETEKMEAKNQA TDFVHEMGWLLHRSQLKSRLGHLNPSMDLFPLRRFNWLMEFSMDHEWCAVVRKLLNILHNGIVCTGDQLSLNEALSEMGLLHRAVRRNSRSLVELLLRYV PDKFGSKDKALDGGSHESILFRPDVIGPAGLTPLHIAAGKDGSEDVLDALTEDPGMVGIVAWKNARDSTGFSPEDYARLRGHYSYIHLVQKKSKRQVVGH VVLDIPSNLSNSNIAINEKQNEGLTSGFEIGHTELRPIQRNCKLCSQKVVYGTASRSQLYRPAMFSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWELLD YGTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Potri.014G114300 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	1.41	0.8139
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	4.69	0.8098	Pt-ALA5.2
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133600 [exp]	16.30	0.7935
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	19.89	0.7545
AT3G49060			U-box domain-containing protei...		Potri.012G143100 [exp]	22.44	0.7660
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.019G118400 [exp]	22.51	0.8060
AT2G46550			unknown protein		Potri.005G071400 [exp]	23.55	0.7991
AT4G10150			RING/U-box superfamily protein...		Potri.014G076800 [exp]	29.89	0.7962
					Potri.001G410477 [exp]	35.55	0.7893
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	37.41	0.7489

Compare expression of checked genes

Potri.014G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.