Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66870 96 / 1e-26 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G43670 96 / 1e-26 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G34480 102 / 2e-26 O-Glycosyl hydrolases family 17 protein (.1) AT1G66852 89 / 7e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G24318 95 / 9e-24 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G63225 88 / 1e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09090 87 / 4e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G29360 92 / 9e-23 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 91 / 2e-22 O-Glycosyl hydrolases family 17 protein (.1) AT5G67460 91 / 2e-22 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115400 [exp] 105 / 1e-27 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 103 / 6e-27 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 103 / 1e-26 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G380600 [exp] 95 / 4e-26 AT1G78520 145 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G351600 [exp] 95 / 5e-26 AT1G78520 119 / 9e-36 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G099000 [exp] 92 / 2e-25 AT1G78520 133 / 4e-42 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G261800 [exp] 98 / 9e-25 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 91 / 3e-22 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G099600 [exp] 85 / 5e-22 AT1G78520 127 / 6e-39 Carbohydrate-binding X8 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032719 [exp] 99 / 2e-25 AT2G16230 430 / 4e-149 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 99 / 3e-25 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 99 / 4e-25 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 99 / 4e-25 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040808 [exp] 93 / 6e-23 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10042492 [exp] 87 / 7e-23 AT1G78520 127 / 3e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10016539 [exp] 92 / 1e-22 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 90 / 6e-22 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 89 / 1e-21 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10005459 [exp] 88 / 1e-21 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.014G114500.1 pacid=42762588 polypeptide=Potri.014G114500.1.p locus=Potri.014G114500 ID=Potri.014G114500.1.v4.1 annot-version=v4.1 ATGGTTATTGCGAAGTATCCCTCGGTCTGCCTTCCTCTGGCCTTTGCTTTACTTCTTTGTCTTGCTGTTTCTACAGAGTCACAATCCTATGGCCATGGAG GAAACCAGGACCAGATCAGGGCAGATGATGTTCAGAGCAGGTGGTGCATTGCTAAACCATCGGCATATAATTTTGAGCTTTTGCGCAACATAGATTATAG CTGTGGGCAAAATGGAGTGGACTGCGGGCAAATTCAACCAGGTGGTGGCTGCTTTCGTCCAGACACTGCCTTTGGACATGCCTCCTACGCTATGAATCTC TTCTTCAAGGCTGCAGGAAAGCACCCATGGGATTGCCATTTCAATGGTACTGGCATTGTTGTTACTCAGGACCCATCCTTTGGTACCTGCACCTATCCCC TGTAA
AA sequence Show only first row Show all	>Potri.014G114500.1 pacid=42762588 polypeptide=Potri.014G114500.1.p locus=Potri.014G114500 ID=Potri.014G114500.1.v4.1 annot-version=v4.1 MVIAKYPSVCLPLAFALLLCLAVSTESQSYGHGGNQDQIRADDVQSRWCIAKPSAYNFELLRNIDYSCGQNGVDCGQIQPGGGCFRPDTAFGHASYAMNL FFKAAGKHPWDCHFNGTGIVVTQDPSFGTCTYPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66870			Carbohydrate-binding X8 domain...		Potri.014G114500 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Potri.001G191000 [exp]	4.12	0.9656
					Potri.001G387900 [exp]	6.32	0.9629
AT4G13440			Calcium-binding EF-hand family...		Potri.019G029100 [exp]	8.00	0.9367
					Potri.006G258250 [exp]	13.03	0.9334
AT5G62420			NAD(P)-linked oxidoreductase s...		Potri.001G125400 [exp]	14.38	0.8837
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102301 [exp]	18.89	0.9538
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.005G244100 [exp]	19.02	0.8996	Pt-ATEXPA11.1,PtrEXPA18
					Potri.001G388100 [exp]	20.92	0.9176
					Potri.015G120700 [exp]	24.24	0.9533
AT1G07300			josephin protein-related (.1)		Potri.001G249500 [exp]	26.98	0.8995

Compare expression of checked genes

Potri.014G114500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.