Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62240 830 / 0 C2H2ZnF RING/U-box superfamily protein (.1) AT2G47090 479 / 5e-158 C2H2ZnF zinc ion binding;nucleic acid binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189700 [exp] 1337 / 0 AT3G62240 818 / 0.0 RING/U-box superfamily protein (.1) Potri.013G004200 [exp] 707 / 0 AT3G62240 501 / 3e-166 RING/U-box superfamily protein (.1) Potri.005G004600 [exp] 565 / 0 AT3G62240 497 / 2e-165 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010069 [exp] 928 / 0 AT3G62240 810 / 0.0 RING/U-box superfamily protein (.1) Lus10004521 [exp] 904 / 0 AT3G62240 763 / 0.0 RING/U-box superfamily protein (.1) Lus10038048 [exp] 763 / 0 AT3G62240 714 / 0.0 RING/U-box superfamily protein (.1) Lus10009987 [exp] 712 / 0 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G114900.1 pacid=42764538 polypeptide=Potri.014G114900.1.p locus=Potri.014G114900 ID=Potri.014G114900.1.v4.1 annot-version=v4.1 ATGGACGATAGCTGTGCAGTGTGCGCGGAGGTTCTAGAATGGGTTGCCTACGGCGCGTGTGGCCATCGTGAAGTTTGCTCCACGTGCGTGGCTCGGCTCC GTTTCATCTGCGACGATCGCCGCTGCTGTATCTGCAAGACCGAGTCATCTGTCGTTTTTGTCACCAAGGCTTTAGGAGATTATACAAGGTTGATTAATGA CTTTTCAGTCTTGCCATCTGAACCAAAGGAGGGTCGAATAGGATCTTACTGGTACCATGAGGACACACAGGCATTTTTTGATGATGTTGACCATTACAAA ATGATAAAGGCCATGTGCAAACTGTCATGTAGTTTATGTGACAAGGAGGAATCAAATGATGGATCCAAGCGCCGGGGGAAGTTTAGGAATATTAATCAGC TGAAGGGTCATTTATTTCATCAACATAAATTGCATATGTGTAGTCTATGTTTGGAAGGACGAAAGGTTTTTCTTTGTGAGCAAAAACTATACGCTAGAGC ACAATTGAATCAGCATATAAGCACAGGTGATTCCGAGGTTGATGGGAGTGAGAGTGAAAGAGGTGGCTTTATGGGACATCCCATGTGTGAATTCTGTAAA AAACCATTCTATGGAGATAATGAGTTGTACACACATATGTCAACCGAACACTATACCTGTCATCTATGCCTGAGGCAGCATCCAGGACAATATGAATATT ACAAGAATTATGATGATCTAGAGATTCATTTCTGTCGAGACCATTTTCTATGTGATGATGAGGAATGTCTTGCCAAAAAGTTTATTGTCTTTCAAACTGA AGCAGAGTTGAAGAGACATAATACAATCGAACATGCTGGACATATGTCTCGTTCTCAGCGAAATGCTGCTCTCCAGATTCCAACTAGCTTTCGATATCGT CGAAGTAATGAACAAGATAATCGTCGTGGAAGGGGACGGACATTCTGTCGTGATCAATCTGATAACCAACTCTCCATAGTCATTCAAGCTAGCTTGGAGA CAGCACATTCTGAAAGCACATCTCGTGATCGATCAGCTAGGGCGCAAGTGATCTCTGATCATGTGGACTCAAATGATATTGATGCAATAGTTCAGCCTTT TGAATCATTAACTGCTACAGATCCTGAAACAACATCGAGATATCTTCAAGCCTTGGGACACTCTTCTAGTAATGCAACTTTGCAAGAATCTTCCTTTCCT CCTCTCTTTACTATTCCTACCAGTGGTCAACAAAGCTCCAAAGATGAATCAGAAGGTTTGCCTAATAATACGATGGCAGCGCATCTCCGGCGCCAGGCCA ACAGAAATGTAACTTTAATCAATTCACCTCAGCAATGGCCGACAGCAAGCCATGGGCATGTATCAAGTAGTTCAGCACTATATAGGCCTACGTTAAATGC ATTGCCTTTGAGTTCAAGAAGTTCTGCTGGTGGACCTGGTCTCTCTAGTTATGCAAGTTCAATTCAGGCTCAGTCTCAGGCCCGACCCTTAGTGGTTCGT GGGCATCTCCCAGCTGGTTTGTTGGGGAGCTCAGGCAGCACAGGTAGGATGAGCCACTCTTCATCAGCCCCAAATCTTGCCGAGACTGGATCATTGAAAC CCTCTATTTCAGATTTTCCTCCAGTTTCTGCAGTGCAGATGCACAAGATGCCCTCCAGTAACCAGGGTGTGCTGAATGTGGAAGATGTTCAAACTGCAAA CAAGTCATTGGTGGAAAGGATACGTGCTGCTCTTGAAAATGACGAGGATAGATATGCTCTTTTTAAAGATATATCTGGACAGTATCGTCAGGGTTCAATT GGCACAGGAGAGTACCTGGATTATGTGCAGCAATTTGGCCTGTCACATTTAATTCCTGAGTTGGCTAGACTTTGTCCTGATGCTCAGAAGCAGAAAGAGC TTGTTGACACCTACAATGCTAGTTTGAGAAGCAATGGGAAGAAAGAGAATGGTTGGGGTCGTGGTAGTACCCATTTAAAAGGCACTACTAATGGATCTAC TAAGAAAGGCAAGGGAATAGCCGTTGAAGATAGCAGTTCAAAGGATAGGTTGGCGGATAGCTTTATTAACTCTGTTCGGGCTCTGCAGTCAAATTACAAG CCTGTGGAAGAAGAGGTGCAGCTATCGAAGGATGGGTATCGGACTGCCAAAGGCAAGTCAAATGTCATTCATAATGAGTTGCAAATGGAACCAAGAATCC AAAATGATTCTTTATCTAGTAAAAATATAAAAGATGGGGGTAATGAGAAGCAACGGAAGAAAACCTCCAAGTTTCATAGAGTGAGGCTAGGTGATGGTTC TATGGCAGCCCTTTTGGATCTCCAAAGCTCTGATCCTGATCCTCACAACACAGGGGAAAACAGGATAGATGATAATGGTAATTCAGGACCTGTGCGTGGA GTCTGGCGAAAAGGTGGGGGACAAAAGCTATTTTCATGA
AA sequence Show only first row Show all	>Potri.014G114900.1 pacid=42764538 polypeptide=Potri.014G114900.1.p locus=Potri.014G114900 ID=Potri.014G114900.1.v4.1 annot-version=v4.1 MDDSCAVCAEVLEWVAYGACGHREVCSTCVARLRFICDDRRCCICKTESSVVFVTKALGDYTRLINDFSVLPSEPKEGRIGSYWYHEDTQAFFDDVDHYK MIKAMCKLSCSLCDKEESNDGSKRRGKFRNINQLKGHLFHQHKLHMCSLCLEGRKVFLCEQKLYARAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCK KPFYGDNELYTHMSTEHYTCHLCLRQHPGQYEYYKNYDDLEIHFCRDHFLCDDEECLAKKFIVFQTEAELKRHNTIEHAGHMSRSQRNAALQIPTSFRYR RSNEQDNRRGRGRTFCRDQSDNQLSIVIQASLETAHSESTSRDRSARAQVISDHVDSNDIDAIVQPFESLTATDPETTSRYLQALGHSSSNATLQESSFP PLFTIPTSGQQSSKDESEGLPNNTMAAHLRRQANRNVTLINSPQQWPTASHGHVSSSSALYRPTLNALPLSSRSSAGGPGLSSYASSIQAQSQARPLVVR GHLPAGLLGSSGSTGRMSHSSSAPNLAETGSLKPSISDFPPVSAVQMHKMPSSNQGVLNVEDVQTANKSLVERIRAALENDEDRYALFKDISGQYRQGSI GTGEYLDYVQQFGLSHLIPELARLCPDAQKQKELVDTYNASLRSNGKKENGWGRGSTHLKGTTNGSTKKGKGIAVEDSSSKDRLADSFINSVRALQSNYK PVEEEVQLSKDGYRTAKGKSNVIHNELQMEPRIQNDSLSSKNIKDGGNEKQRKKTSKFHRVRLGDGSMAALLDLQSSDPDPHNTGENRIDDNGNSGPVRG VWRKGGGQKLFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.014G114900 [exp]	0	1
AT5G04670			Enhancer of polycomb-like tran...		Potri.010G235900 [exp]	6.92	0.7590
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.002G067400 [exp]	7.74	0.7219	Pt-GBF4.1
AT1G31870			unknown protein		Potri.003G087200 [exp]	8.88	0.7796
AT2G24960			unknown protein		Potri.002G023800 [exp]	16.37	0.6489
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	18.33	0.7394	Pt-TOP1.2
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.006G085600 [exp]	22.27	0.7018	MYB211,Pt-MYB3.1
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	25.69	0.7188
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.011G096900 [exp]	27.92	0.6671
AT3G14750			unknown protein		Potri.009G076700 [exp]	29.69	0.7243
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	30.16	0.7306

Compare expression of checked genes

Potri.014G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.