Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-XTH33.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10550 367 / 1e-127 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT2G01850 244 / 3e-79 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G14720 236 / 3e-76 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT1G32170 224 / 1e-71 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 207 / 1e-64 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT3G44990 189 / 2e-58 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT2G06850 186 / 5e-57 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT2G36870 183 / 7e-56 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G25050 177 / 1e-53 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT5G13870 172 / 8e-52 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138400 [exp] 245 / 1e-79 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.010G102300 [exp] 244 / 2e-79 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.009G163850 [exp] 223 / 1e-71 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.003G097300 [exp] 222 / 2e-70 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.001G136100 [exp] 221 / 5e-70 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.016G098600 [exp] 190 / 9e-59 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.006G122900 [exp] 188 / 6e-58 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 180 / 6e-55 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.003G159700 [exp] 180 / 8e-55 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013000 [exp] 376 / 2e-131 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10029165 [exp] 375 / 4e-131 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013240 [exp] 234 / 2e-75 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 232 / 2e-74 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029000 [exp] 228 / 1e-72 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 220 / 1e-69 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10026535 [exp] 197 / 2e-61 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 196 / 9e-61 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 194 / 6e-60 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 193 / 8e-60 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.014G115000.1 pacid=42764418 polypeptide=Potri.014G115000.1.p locus=Potri.014G115000 ID=Potri.014G115000.1.v4.1 annot-version=v4.1 ATGGCATTTCTGCAAGAAATCGTAGTTTTGGGTCTTCTAGTCCTGTGCATGACTGCAGCGGTTTCTTCACATAGCAGGCATTCGCGTTACACGCCTCCTA ATGTTATGCGATTAACTGATGCTTTTAGTCATGTCTCAATCGGTCAAGAATATTATACTTTTTTTGGAGGCTCAAATACTAAGCTGCTAAATAACGGGTC TTCTGCTAATCTTGCTCTTGACAAATCCTCAGGCTCGGGATTGGCCTCGCGGAACAAATATTACTATGGATTCTTTAGTGCTGCCATAAAGTTGCCGTCT GGTCTGTCACCTGGAGTTGTAGTAGCCTTCTATCTGTCTAATGCAGATAATTACCCGCACAACCATGATGAGATTGACATTGAACTTCTTGGTCATGATA TGAGAAACGATTGGGTCCTTCAAACCAATGTCTACGCAAATGGAAGTACCGGCACCGGAAGAGAAGAGAAATTCTATCTTTGGTTTGATCCCACAGAGCA GCACCATCATTACAGCATCATTTGGAACAGTCATCACATTGTGTTTCTAGTGGACAACGTACCAGTAAGAGAGTTCGCCCACAGCAGTTCTTACCCTTCT GTGTATCCATCAAAGCCTATGTCTCTTTATGCAACAATATGGGATGGTTCTCAGTGGGCAACCCATGGAGGAAAATACCCAGTTAACTACAAATATGCTC CATTTGTGGTTTCCTTTGCAGAGATGGAAATGACTGGTTGCATTTTCAACCAAACTGCCCTCGTTACTTCATGTTCTAAGGCTAATCCTTCGAGCTTGGA CCCTGTTGACGGACCGGAGTTTGTTAGGCTGTCAAACGAACAGAGTGTGGCAATGGACTGGGCAAGAAGGAAGCTCATGTTCTACTCTTACTGTAACGAT AGATCCAGGTTCAAGGCCATGCCACCTGAGTGCAAATAA
AA sequence Show only first row Show all	>Potri.014G115000.1 pacid=42764418 polypeptide=Potri.014G115000.1.p locus=Potri.014G115000 ID=Potri.014G115000.1.v4.1 annot-version=v4.1 MAFLQEIVVLGLLVLCMTAAVSSHSRHSRYTPPNVMRLTDAFSHVSIGQEYYTFFGGSNTKLLNNGSSANLALDKSSGSGLASRNKYYYGFFSAAIKLPS GLSPGVVVAFYLSNADNYPHNHDEIDIELLGHDMRNDWVLQTNVYANGSTGTGREEKFYLWFDPTEQHHHYSIIWNSHHIVFLVDNVPVREFAHSSSYPS VYPSKPMSLYATIWDGSQWATHGGKYPVNYKYAPFVVSFAEMEMTGCIFNQTALVTSCSKANPSSLDPVDGPEFVRLSNEQSVAMDWARRKLMFYSYCND RSRFKAMPPECK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Potri.014G115000 [exp]	0	1	Pt-XTH33.1
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.003G159700 [exp]	11.74	0.8409	EXGT.2
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.003G071500 [exp]	15.49	0.8328
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	15.62	0.8746
AT5G18610			Protein kinase superfamily pro...		Potri.010G215100 [exp]	18.60	0.8641
					Potri.010G031700 [exp]	25.69	0.8273
AT5G02280			SNARE-like superfamily protein...		Potri.009G069800 [exp]	29.52	0.8613
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	29.79	0.8626
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.007G052600 [exp]	38.41	0.8528
					Potri.008G195700 [exp]	44.00	0.8529
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Potri.019G125000 [exp]	45.54	0.8270	Pt-XTH9.1

Compare expression of checked genes

Potri.014G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.