Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47115 340 / 6e-117 unknown protein AT1G10660 250 / 2e-81 unknown protein AT5G62960 236 / 2e-75 unknown protein AT3G27770 194 / 2e-59 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G190200 [exp] 593 / 0 AT2G47115 344 / 1e-118 unknown protein Potri.010G042600 [exp] 254 / 1e-82 AT1G10660 372 / 1e-129 unknown protein Potri.012G082400 [exp] 244 / 1e-78 AT5G62960 387 / 1e-134 unknown protein Potri.015G078200 [exp] 238 / 3e-76 AT5G62960 382 / 8e-133 unknown protein Potri.001G347400 [exp] 231 / 1e-73 AT3G27770 314 / 9e-107 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038056 [exp] 282 / 1e-93 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 268 / 2e-88 AT1G10660 246 / 3e-80 unknown protein Lus10029133 [exp] 239 / 8e-76 AT1G10660 338 / 5e-115 unknown protein Lus10042109 [exp] 229 / 6e-73 AT5G62960 397 / 1e-138 unknown protein Lus10027692 [exp] 228 / 7e-73 AT5G62960 355 / 2e-122 unknown protein Lus10032130 [exp] 228 / 2e-72 AT5G62960 303 / 2e-101 unknown protein Lus10014556 [exp] 225 / 3e-71 AT5G62960 305 / 3e-102 unknown protein Lus10039964 [exp] 189 / 8e-56 AT5G62960 247 / 7e-78 unknown protein Lus10002386 [exp] 164 / 3e-48 AT5G62960 320 / 5e-109 unknown protein Lus10013029 [exp] 167 / 4e-46 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G115200.1 pacid=42763406 polypeptide=Potri.014G115200.1.p locus=Potri.014G115200 ID=Potri.014G115200.1.v4.1 annot-version=v4.1 ATGGCACTAGTGGTATACTGGTATGATTTCGTTTGCTTTGGCATTGTTGCTGCGGCTCTTCTTGTGTCCTTATGGATGCTATGGAGGAGGGAACTTGCCT CGACAAGTGAAGATAATATCATGTATCAGAGCCTCCTCGTGGCTCGGCCGGATACTTATGATCGGACCGTGCAAGCAATTGCAATACCAAGAAACCATGT TGGTTCTGCGCAACTATGGACCAGTTGTTGGAAAGGGGTGCACCCCGGGTGGCTCCTAGCTACTCGTTTCATCTCCTTCCTGGTCATGGCTGGATTCTTG TTGGCGGATTTCTTGAAATGGGATGCCACCATATTTGTTTACTACACCGAGTGGACATTTACGTTGGCTTTGGTATATTTCGCGCTTGGCACTGTGATAT CTGCGTATGGGTGTTTTGTGTCTTTAAAGAAACCAGCTGCCTCTGGAAAGGGCGAAAATCCTGTGTTCTTGGAAGGGGACGTGGAAGAGACTGGAACGGC TACCTCTATAACTTACAAGGAAAAGGAAAGTAGGAGTACAGTCAGGTTGCAAAGTCACCGTGCTGAGGAGGCAATTCAAGAAAGAGCAGGATTTTGGGGA TACCTTATGCAAATTATATACCAAACTTGTGCAGGTGCTATCGTCCTAACAGACATTGTATTTTGGTGTGTTATAGTCCCTTTTTTATCAAATACGCACC TCGGCCTCAATGTGTTGATGGGTTGCATGCATTCCCTGAATGCTTTTTTTCTATTGCTAGATACTGTTCTCAATAGCCTTCCATTTCCATGGTTCCGCAT TGCATATTTTGTGCTGTGGAGCTGCCTCTATGTCATTTTCCAGTGGATTATTCACGCATGTGGTTTTTCGTGGTGGCCATACCCATTCCTCGAGCTTGAC ACGCCCTGGTCTCCCTTATGGTATTTTTTGGTGGCTCTAATGCACATTCCTTGTTATGGGATATATGCACTGATATTTAAAGCAAAAAATGCTATTTTCC CCCGGTTGTTCCCTCGTGCTTTTGTGAGATCCTTCTAG
AA sequence Show only first row Show all	>Potri.014G115200.1 pacid=42763406 polypeptide=Potri.014G115200.1.p locus=Potri.014G115200 ID=Potri.014G115200.1.v4.1 annot-version=v4.1 MALVVYWYDFVCFGIVAAALLVSLWMLWRRELASTSEDNIMYQSLLVARPDTYDRTVQAIAIPRNHVGSAQLWTSCWKGVHPGWLLATRFISFLVMAGFL LADFLKWDATIFVYYTEWTFTLALVYFALGTVISAYGCFVSLKKPAASGKGENPVFLEGDVEETGTATSITYKEKESRSTVRLQSHRAEEAIQERAGFWG YLMQIIYQTCAGAIVLTDIVFWCVIVPFLSNTHLGLNVLMGCMHSLNAFFLLLDTVLNSLPFPWFRIAYFVLWSCLYVIFQWIIHACGFSWWPYPFLELD TPWSPLWYFLVALMHIPCYGIYALIFKAKNAIFPRLFPRAFVRSF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47115			unknown protein		Potri.014G115200 [exp]	0	1
					Potri.006G256900 [exp]	1.41	0.9131
AT5G23170			Protein kinase superfamily pro...		Potri.004G221800 [exp]	2.00	0.8919
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.002G207672 [exp]	2.44	0.8811
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	3.46	0.8971
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	4.24	0.8690	Pt-TAN1.2
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	5.00	0.8848
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	6.48	0.8343
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.008G085500 [exp]	6.92	0.8467
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Potri.010G213000 [exp]	7.00	0.8768	CHI.1
AT3G27200			Cupredoxin superfamily protein...		Potri.016G015200 [exp]	7.34	0.8250

Compare expression of checked genes

Potri.014G115200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.