Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02475 217 / 1e-71 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G01883 198 / 4e-64 Polyketide cyclase / dehydrase and lipid transport protein (.1) AT1G02470 174 / 2e-54 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G190300 [exp] 331 / 2e-116 AT1G02475 241 / 6e-81 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009002 [exp] 228 / 7e-76 AT1G02475 253 / 5e-86 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10009629 [exp] 219 / 5e-72 AT1G02475 237 / 4e-79 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF03364 [poplar] [flax] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Potri.014G115400.1 pacid=42764495 polypeptide=Potri.014G115400.1.p locus=Potri.014G115400 ID=Potri.014G115400.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTGCTGCTGCTTCAATGACTGTTGCGCATTGGTCAACCCCAACTTCCCTCCACTTCTCAACTGCTAAGAACAGGAACGCAGCAGTCTTAT TAAACTCCTTACGCACTTGCAAAATCACAGCATCATCGTCTATCAGTAAAGTCCAATATGGATATGGATACTCGAAGAGAAGCTCAATTCTTACTGGTTT CAAGCCCTTTTCTTCTCCAGTCATGGAGTTTCAGGATTGCACGGTTAAGATGGAAATTGATGTGCCTGTTGGGTTGGCTTATAAGCTTTATTCAGATCGT GAATCAATTCCTCGTTGGATGCCCTTCATTTCATCTGTACAGGTACTCAAAGACAAGCCTGACCTATCACGGTGGTCACTGAAGTATAAAGCACTTGGTC AGGAACTTGAATATTCTTGGCTTGCTAGAAATATGCAGCCAACCCCCAATCAGAAAATTCATTGGAGATCTCTGGAAGGTCTTCCTAACAGAGGCTCTGT TCGATTTTTTCCTAAAGGTTCTTCATCATGTCTGGTAGAACTAACTGTTTCATATGAAGTTCCCCGAATTTTGGCTCCTCTAGCAACAGCACTCCAGCCT TTGCTTGAGAGCTTACTCAGAGGGGGTTTGGAAAGATTTGCAACACTTGCGAAAAGCACTTTGGCAGACTGA
AA sequence Show only first row Show all	>Potri.014G115400.1 pacid=42764495 polypeptide=Potri.014G115400.1.p locus=Potri.014G115400 ID=Potri.014G115400.1.v4.1 annot-version=v4.1 MAAAAAASMTVAHWSTPTSLHFSTAKNRNAAVLLNSLRTCKITASSSISKVQYGYGYSKRSSILTGFKPFSSPVMEFQDCTVKMEIDVPVGLAYKLYSDR ESIPRWMPFISSVQVLKDKPDLSRWSLKYKALGQELEYSWLARNMQPTPNQKIHWRSLEGLPNRGSVRFFPKGSSSCLVELTVSYEVPRILAPLATALQP LLESLLRGGLERFATLAKSTLAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02475			Polyketide cyclase/dehydrase a...		Potri.014G115400 [exp]	0	1
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.001G067800 [exp]	8.88	0.9201	Pt-GLYRS.1
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375400 [exp]	20.00	0.9128
AT4G25040			Uncharacterised protein family...		Potri.017G062100 [exp]	47.24	0.8992
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G212000 [exp]	52.64	0.8915
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177900 [exp]	58.37	0.8942
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	63.60	0.8876
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016300 [exp]	66.40	0.8836
AT2G46420			Plant protein 1589 of unknown ...		Potri.002G169900 [exp]	69.97	0.8888
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375300 [exp]	76.24	0.8871
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	77.49	0.8903

Compare expression of checked genes

Potri.014G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.