Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25580 452 / 2e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 436 / 6e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G34370 379 / 5e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G29710 372 / 3e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15690 301 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 271 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G09950 279 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 267 / 2e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 269 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 261 / 5e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058300 [exp] 345 / 4e-109 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 278 / 2e-86 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 286 / 4e-85 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 276 / 5e-85 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G001000 [exp] 276 / 1e-83 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G005400 [exp] 275 / 2e-82 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 273 / 1e-81 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G137200 [exp] 269 / 2e-80 AT3G14330 787 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 269 / 1e-79 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041867 [exp] 563 / 0 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028413 [exp] 548 / 0 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014049 [exp] 325 / 1e-102 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019864 [exp] 322 / 1e-101 AT2G15690 477 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032688 [exp] 316 / 3e-100 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008570 [exp] 305 / 4e-96 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 278 / 1e-83 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 273 / 8e-82 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 264 / 9e-78 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 251 / 7e-77 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.014G116600.4 pacid=42763300 polypeptide=Potri.014G116600.4.p locus=Potri.014G116600 ID=Potri.014G116600.4.v4.1 annot-version=v4.1 ATGTCCAGAAAGAGAGCTTCGCTTCTCACTATCAAATCCATCGCTTCTTTATCAAAGGTATGCTCTTCAAGTAACTCCTTTGAGTCTATCACTTTTTTCA AGAATCTTAGCACCGCCACTGAAAGATTTGATTTTCAAAACTCGAATGGGTATCACGAACAGAATTCTAATGAGCATTTCCATAAACCAGATGGGCCTTA TGGTTATAACAACGAAAACTCTGGTGGAAACAACTTAAACCCTAATGGGGGTTTTAGGGAAAGCCCTAGAATTGATTTATGGAACAACCCAATTGGGAAA AATGTGAATTCTACTGGGTTTCATGGGAAAAATCGTGTAGATTTTCAGCAAAACTGTGATGGAGCTTCCTGGGAAAGAAGCAGGGGAGAGAATCATAATA ACCGAGCTGAGAAAAATGGAAACTTTAGTGGTTATTATGAACGTAATAATGGGAGTTCTCAACAGAACTATGGTTGGGTTGGTGGGCAGCATAGTCAAAA TGGGTATTATGGAGGACATGGAAATGCGCAACTGAGTCGGAACGAGCCTGGGTTTAATTCGCAAGGTCTTTCAGAGTCACAAAGAAGCCTGAATAGCAAT TACACTCATAATGTTGAGAAATTTCACCATGGTCTCAATGATCATTACATGGTAAATGGTGGACAATATCAACAGAACCAATATTTTGGACAGCACCAGC AGAACCAATATTTTGGACAACACCAGCAGAATTTGAACGTTGAACAATATCAGCCAAACTGTAACTCTTTTCAGAGCAGCATGGAGGCTTCTCAAGTATC AAACTATGCTAAACCTGAAGGGGATTCAACCGAATCTTCCAAAAGTAGCTTGAATAGAGGTTCTATGGAGGAGCTGGATGAATTTTGCAAGGAGGGAAAG GTGAAGGAAGCTGTGGAATTTTTGCAGTTGTTACAGAAGCAGAGTGTTTTTGTCGATCTATCACGCTATTTGCAGTTGATGCAGGCATGTGGAGAGGCTG AAGCTCTAGAGGAAGCAAGAGTGATTCATGACTGCATTGTAAGATCACAGTCTCCTCTAGATGTTGGCACACTTAATAAGATCTTAGAAATGTACTCAAA ATGTGGTGCCATGGATGAAGCGTTCAGTGTATTTGACAACATGCAAGAGTGCAATTTGACTTCATGGTATATCATGATAACATGGCTTGCTAAGAATGGG TATGGGGAGGATGCCATTGATCTGTTTAATCAGTTTAAGCAAGGAGGACTGAAACCTGATGCACAAATTTTTGTTGGGGTGTTCTCTGCTTGTAATGTCT TGGGTGATATCAATGAGGGATTGCTGCACTTTGAGTCCATGTGGAAAGAGTTCAGCATTGTCCCATCAATGGAGCACTATGTGAGCATTGTGGACATGTT GGGAAGTAACGGATATCTAGTTGAAGCCTTGGAATTCATTGAAAAGATGCCAATGGAGCCTAGTGTAGATGTTTGGGAAACTTTAATGAATCTCTGCAGG GCACATGGGCACTTGGAGCTTGGAGATCGCTGTGCTGAGCTTATTGAGCAATTAGACCCCTCCCGCTTGAATGAGCAATCTAATGCAGGTCTTGTACCAG TGAAAGCTTCAGACATTGCAAAAGAGAAAAAGAAGAAGACAGCAAGTCAAAATCTTTTAGATGTTAGGAGCAGGGTCCATGAATATCGAGCGGGGGATAC ATCTTTTCCTGACAGGGATAGAGTTTATGCCCTGCTCAGGGGTATGAAGGCACAAATGAAAGATGCTGGTTATATTCCAGTAACAAGATTTGTGTTGCAT GACATAGATGAAGAAAGCAAGGAGGACGCTCTTCTTGCTCATAGTGAGAGACTTGCTACTGCTCATGGTCTTCTGACCACAGCTGCTCGTTCTCCTCTTC GAGTAGTCAAGAATCTTCGTTTTTGTGGTGATTGCCACAATGCGATGAAGATCATCTCGAAACTTGTTGGCAGACAACTCATCATGCGAGATGCCAAGAG GTTTCACCATTTCAAAGATGGGGTCTGCTCTTGTGGGGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.014G116600.4 pacid=42763300 polypeptide=Potri.014G116600.4.p locus=Potri.014G116600 ID=Potri.014G116600.4.v4.1 annot-version=v4.1 MSRKRASLLTIKSIASLSKVCSSSNSFESITFFKNLSTATERFDFQNSNGYHEQNSNEHFHKPDGPYGYNNENSGGNNLNPNGGFRESPRIDLWNNPIGK NVNSTGFHGKNRVDFQQNCDGASWERSRGENHNNRAEKNGNFSGYYERNNGSSQQNYGWVGGQHSQNGYYGGHGNAQLSRNEPGFNSQGLSESQRSLNSN YTHNVEKFHHGLNDHYMVNGGQYQQNQYFGQHQQNQYFGQHQQNLNVEQYQPNCNSFQSSMEASQVSNYAKPEGDSTESSKSSLNRGSMEELDEFCKEGK VKEAVEFLQLLQKQSVFVDLSRYLQLMQACGEAEALEEARVIHDCIVRSQSPLDVGTLNKILEMYSKCGAMDEAFSVFDNMQECNLTSWYIMITWLAKNG YGEDAIDLFNQFKQGGLKPDAQIFVGVFSACNVLGDINEGLLHFESMWKEFSIVPSMEHYVSIVDMLGSNGYLVEALEFIEKMPMEPSVDVWETLMNLCR AHGHLELGDRCAELIEQLDPSRLNEQSNAGLVPVKASDIAKEKKKKTASQNLLDVRSRVHEYRAGDTSFPDRDRVYALLRGMKAQMKDAGYIPVTRFVLH DIDEESKEDALLAHSERLATAHGLLTTAARSPLRVVKNLRFCGDCHNAMKIISKLVGRQLIMRDAKRFHHFKDGVCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25580			Tetratricopeptide repeat (TPR)...		Potri.014G116600 [exp]	0	1
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	3.74	0.8822
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	4.47	0.8837
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	6.24	0.8762
AT2G02148			unknown protein		Potri.008G143700 [exp]	6.85	0.8109
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.010G245000 [exp]	7.07	0.8651
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	8.48	0.8709
AT4G31430			unknown protein		Potri.018G006200 [exp]	10.72	0.8317
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	13.85	0.8577
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Potri.008G142600 [exp]	16.52	0.7900
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	19.59	0.8228	SDG906,SUVH3.3

Compare expression of checked genes

Potri.014G116600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.