Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09330 158 / 2e-49 ECHIDNA, ECH unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006250 [exp] 161 / 5e-51 AT1G09330 330 / 2e-117 unknown protein Potri.005G010400 [exp] 159 / 4e-50 AT1G09330 328 / 2e-116 unknown protein Potri.002G191700 [exp] 157 / 1e-49 AT1G09330 240 / 6e-82 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010898 [exp] 155 / 2e-48 AT1G09330 313 / 2e-110 unknown protein Lus10031433 [exp] 155 / 5e-48 AT1G09330 315 / 6e-111 unknown protein Lus10010063 [exp] 152 / 2e-47 AT1G09330 308 / 1e-108 unknown protein Lus10004514 [exp] 131 / 2e-38 AT1G09330 269 / 2e-92 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05832 [poplar] [flax] DUF846 Eukaryotic protein of unknown function (DUF846)
Representative CDS sequence Show only first row Show all	>Potri.014G116900.17 pacid=42764288 polypeptide=Potri.014G116900.17.p locus=Potri.014G116900 ID=Potri.014G116900.17.v4.1 annot-version=v4.1 ATGGATCTGATTATGAGAGAAACCTATGCGAATCCAAAGACATGTTTCTTTCAAGTCCTCTTCCAGCCCTATTTTTTTGACAGCTTTGTCATCATTTTTG TGGTCATGGTTTTTCTTGCTGCCCTTGATTTTTGGATTTTAGTTGCGCTTAGATGGTGGAATGAGCAGGGTGAGAGTGTCAGTCAGTCATTGGCTCGTCT GAACAAGAAGGATTCTTGGCTATTTTGGTGGACATTATTCCTTAATGTGCATGCTGCTGCTTGGGTCATCATTGGAATATTTTCCGTTAAAAGGTTTGAG GCTGATTATGTCCTTGTAGTTGCTGTTTGTGCAAGCCTCGGCATAGCAAACATTGTTGGATTCACCAAGTGCCGTAAAGCATCTGCTGGGGATCAGATTT CAACTGAGAGTAAATACCATTCTGTTCTGACAAGTCGAGTTGTCCTAAAATTTATGCTTATTGGGAAAATTGTTACGTATTACTGCGATCACCAGAACCG TGAGAGACATTTTTCATAA
AA sequence Show only first row Show all	>Potri.014G116900.17 pacid=42764288 polypeptide=Potri.014G116900.17.p locus=Potri.014G116900 ID=Potri.014G116900.17.v4.1 annot-version=v4.1 MDLIMRETYANPKTCFFQVLFQPYFFDSFVIIFVVMVFLAALDFWILVALRWWNEQGESVSQSLARLNKKDSWLFWWTLFLNVHAAAWVIIGIFSVKRFE ADYVLVVAVCASLGIANIVGFTKCRKASAGDQISTESKYHSVLTSRVVLKFMLIGKIVTYYCDHQNRERHFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.014G116900 [exp]	0	1
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	9.89	0.7408
AT4G24480			Protein kinase superfamily pro...		Potri.005G153100 [exp]	10.90	0.6987
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Potri.015G082800 [exp]	14.96	0.7241
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.019G064200 [exp]	22.73	0.7081
AT5G38220			alpha/beta-Hydrolases superfam...		Potri.004G097300 [exp]	60.48	0.6530
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.010G191900 [exp]	64.31	0.6848
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.004G055700 [exp]	73.20	0.6840
AT3G07720			Galactose oxidase/kelch repeat...		Potri.014G168300 [exp]	80.49	0.6683
AT3G49950	GRAS		GRAS family transcription fact...		Potri.005G145600 [exp]	91.00	0.6637
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.003G167800 [exp]	95.83	0.6736

Compare expression of checked genes

Potri.014G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.