Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA2.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02400 368 / 1e-127 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 317 / 7e-108 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G30040 306 / 4e-103 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 295 / 9e-99 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G78440 271 / 2e-89 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT3G19000 142 / 2e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51810 138 / 1e-37 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT1G55290 137 / 2e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 135 / 6e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G07200 135 / 1e-36 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G191900 [exp] 562 / 0 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 407 / 5e-143 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 398 / 2e-139 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.001G378400 [exp] 341 / 6e-117 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 333 / 3e-113 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 324 / 3e-110 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.004G146000 [exp] 153 / 3e-43 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146100 [exp] 144 / 6e-40 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G107600 [exp] 142 / 3e-39 AT3G19000 459 / 4e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009998 [exp] 434 / 2e-153 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10025016 [exp] 433 / 3e-153 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 410 / 5e-144 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 321 / 3e-109 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 303 / 5e-103 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 270 / 2e-89 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 197 / 2e-62 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10015016 [exp] 145 / 2e-40 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006350 [exp] 142 / 4e-39 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027399 [exp] 141 / 1e-38 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G117300.1 pacid=42762715 polypeptide=Potri.014G117300.1.p locus=Potri.014G117300 ID=Potri.014G117300.1.v4.1 annot-version=v4.1 ATGGTAGTTCCTTCTCCAACACCAATACGAACCAAAACGACGAAGGCTTTAGGAATTCCTACTGTTGATCTTTCTCTTGACAACTCGAGCGTATCACAGT TGATCGTAAGAGCATGCGAAGAATATGGATTCTTCAAAGTTATAAATCATGGGGTCAACAAGGAGGTCGTGACAAGACTGGAGGAGGAAGCAGCTCGTTT TTTCGGAAAACCAGCCGCGGAGAAGCAACAGGCTGGACCTGCTAGTCCTTTTGGATATGGTTGCAAGAACATTGGCTGCCATGGTGACACGGGCGAGCTC GAGTATCTTCTCCTCCACACCAATCTTCTCTCCGTCTCTGAAAGATCCAAAACCATCTCGAACGACCCTTCAGGATTCAGTTGTGCGGTGAGTGATTACA TAAGAGCAGTTAGGCAGCTTGCATGTGAGATTCTTGATCTTGCGGCTGAGGGCTTGTGGGTCCCGGATAAACATGTATTCAGTAGGCTCATCAGAGACGT CCATAGCGATTCAGTTCTTAGACTTAATCACTATCCTGCAGTCGAAGAGATCGCAGATTGGGACCCATCACCTATAAGAATTGGTTTTGGTGAGCACTCC GACCCTCAGATCTTGACCATCTTGCGATCCAACGATGTTGCGGGCCTCCAAATTTGCTTGCATGATGGTTTGTGGGTACCCGTCCCTCCTGACTCCACAG GATTCTACGTGATTGTGGGTGATTCCTTTCAGGTTTTAACCAATGGGAGATTTGAAAGCGTGAGGCATAGGGTATTGACAAACTCGAGCCAGCCAAGAAT GTCAATGATGTATTTTGGGGCACCACCCCTTACTGCATGGATCGCTCCTCTCTCACACATGGTTTCACAGCAAAATCCAAGCCTTTATAAACCCTTCACT TGGAGTGAATTCAAGAAAGCTGCCTACTCTCTACGTTTGAGAGATACGCGTCTTGACCTCTTCAAGATTCACGCCACTGAAAAATCTGCTTCATTGTAA
AA sequence Show only first row Show all	>Potri.014G117300.1 pacid=42762715 polypeptide=Potri.014G117300.1.p locus=Potri.014G117300 ID=Potri.014G117300.1.v4.1 annot-version=v4.1 MVVPSPTPIRTKTTKALGIPTVDLSLDNSSVSQLIVRACEEYGFFKVINHGVNKEVVTRLEEEAARFFGKPAAEKQQAGPASPFGYGCKNIGCHGDTGEL EYLLLHTNLLSVSERSKTISNDPSGFSCAVSDYIRAVRQLACEILDLAAEGLWVPDKHVFSRLIRDVHSDSVLRLNHYPAVEEIADWDPSPIRIGFGEHS DPQILTILRSNDVAGLQICLHDGLWVPVPPDSTGFYVIVGDSFQVLTNGRFESVRHRVLTNSSQPRMSMMYFGAPPLTAWIAPLSHMVSQQNPSLYKPFT WSEFKKAAYSLRLRDTRLDLFKIHATEKSASL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Potri.014G117300 [exp]	0	1	GA2.5
AT2G36210			SAUR-like auxin-responsive pro...		Potri.006G211000 [exp]	14.89	0.7109
AT1G18290			unknown protein		Potri.015G036800 [exp]	16.30	0.7280
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.018G123100 [exp]	19.02	0.7136
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.010G198800 [exp]	26.68	0.7105	EMB101.1
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G121400 [exp]	27.16	0.6976
AT1G55270			Galactose oxidase/kelch repeat...		Potri.003G217700 [exp]	32.72	0.6068
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	33.76	0.7067
AT5G47530			Auxin-responsive family protei...		Potri.016G010900 [exp]	39.79	0.6630
AT3G10540			3-phosphoinositide-dependent p...		Potri.008G028800 [exp]	42.95	0.6761
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.003G215201 [exp]	42.95	0.6533

Compare expression of checked genes

Potri.014G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.