Plant FIBer expression Database

Potri.014G117400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47210 617 / 0 MYB myb-like transcription factor family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003470
[exp]
683 / 0 AT2G47210 631 / 0.0 myb-like transcription factor family protein (.1)
Lus10021650
[exp]
616 / 0 AT2G47210 552 / 0.0 myb-like transcription factor family protein (.1)
Lus10015735
[exp]
580 / 0 AT2G47210 528 / 0.0 myb-like transcription factor family protein (.1)
Lus10034713
[exp]
100 / 5e-25 AT2G47210 86 / 9e-21 myb-like transcription factor family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05499 DMAP1 DNA methyltransferase 1-associated protein 1 (DMAP1)
CL0123 HTH PF16282 SANT_DAMP1_like SANT/Myb-like domain of DAMP1
Representative CDS sequence
>Potri.014G117400.1 pacid=42762799 polypeptide=Potri.014G117400.1.p locus=Potri.014G117400 ID=Potri.014G117400.1.v4.1 annot-version=v4.1
ATGGACGCCAAGGACATCTTGGGACTGCCAAAAACTCCATTGCCACTAACACAAGAGAAGAAATCCCAACCTAAAAAAGACTCGCAGAGAAAACCTGATG
GCATTTCGCGTGAGGTTTATGCACTTACAGGTGGATTGGCTCCTCTTATGCCATCGATTGACGTGTCGCAACTGAAACGACGCCCTCCATCGGACGAGAA
GATCACCTGGCAGTGGCTTCCTTTTACAAGTTCTGCTCGGAAGGATAATCTACAGCTTTACCATTGGGTTAGAGTTGTGAATGGTGTTCCACCCACAGGT
GATTATTCCTTTGCCAAGTACAACAAGTCTGTTGATGTTGTGAAATATACAGAGGAGGAATATGAAAAGTATTTGACTGATCCTATGTGGACCAAAGAAG
AGACAGATCAATTGTTTGACTTGTGTGAACGATTTGATCTCCGCTTTGTAGTGATAGCAGACCGATTCACGTCATCTCGTAGTGTTGAGGAATTGAAAGA
TCGTTATTACAATGTTTCTCGAGCTATGTTGATTGCCAGAGCTCCATCACCTGGGGATGTTTCAGGGCACCCTCTGGTTAAGGAACCTTACAACAGTTCA
CAAGAGACAGAACGCAAGCGAGCATTGTCTATGGTCCTCTCGCAAACAAAGCATCAAGAGCGAAAAGACACTCAGGTTTTGGCTGAAGCGAAGAAAATAG
TTGAGTCACGCATAACTGCACTGGGTACTGAAGAATCTGCATTGCCTGTTGCGTCAAATGTTGACCCTGATATTGCTGAGATAGCAGTTAATCTTGATGA
TTCTGCATCACCTTCATCTAATGCTCAGCTTGCCTCTGCATCAGTTGCACCTTCAACTTCAGCAATGGCAGATAATGCTTCTACTCTAGCTTCCCTGCGT
ATGCTTCGTGTTTACCTGAGAACATATGGGCTCGAGCAAATGGTGCAAGCTGCAAGTTCATCTGCAGGACTTAGGACAATCAAGAGGGTTGAACAAACAT
TGCAAGATCTTGGGGTTAGTTTAAAACCAAAGGTGCCAACCAAAGCTGTTTGTTCTGAGCACCTTGAATTAAGAAAGGAAATATTGACATTGCTGAATCT
TCAAAAACAGTTACAATACAAGGAGGCAGAAGGTTCATCTTTTCGCGATGGTTCATACACTGATATACCAGGCTCACCTAAGCGGTCACAGCGTGATCAG
GATCGAACATTTATTCCGGACTCAATGAGTTTTGGAGGAGACAGAGTTGGCAGAAGGGACCAGAAACGCAAGGGACCTGGAAGGGTATCTGAGAATCCAT
CTTCACCCGCTCATAAAAGGCCCAGAAAATTGAAGGCTTCTGATCTATGA
AA sequence
>Potri.014G117400.1 pacid=42762799 polypeptide=Potri.014G117400.1.p locus=Potri.014G117400 ID=Potri.014G117400.1.v4.1 annot-version=v4.1
MDAKDILGLPKTPLPLTQEKKSQPKKDSQRKPDGISREVYALTGGLAPLMPSIDVSQLKRRPPSDEKITWQWLPFTSSARKDNLQLYHWVRVVNGVPPTG
DYSFAKYNKSVDVVKYTEEEYEKYLTDPMWTKEETDQLFDLCERFDLRFVVIADRFTSSRSVEELKDRYYNVSRAMLIARAPSPGDVSGHPLVKEPYNSS
QETERKRALSMVLSQTKHQERKDTQVLAEAKKIVESRITALGTEESALPVASNVDPDIAEIAVNLDDSASPSSNAQLASASVAPSTSAMADNASTLASLR
MLRVYLRTYGLEQMVQAASSSAGLRTIKRVEQTLQDLGVSLKPKVPTKAVCSEHLELRKEILTLLNLQKQLQYKEAEGSSFRDGSYTDIPGSPKRSQRDQ
DRTFIPDSMSFGGDRVGRRDQKRKGPGRVSENPSSPAHKRPRKLKASDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47210 MYB myb-like transcription factor ... Potri.014G117400
[exp]
0 1
AT1G17820 Putative integral membrane pro... Potri.017G155000
[exp]
2.23 0.8857
AT5G06950 bZIP TGA2, AHBP-1B bZIP transcription factor fami... Potri.006G039000
[exp]
2.64 0.9001
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Potri.015G084000
[exp]
3.74 0.8821
AT5G13950 unknown protein Potri.002G237800
[exp]
5.83 0.8946
AT5G11380 DXPS3 1-deoxy-D-xylulose 5-phosphate... Potri.006G249700
[exp]
6.08 0.8514
AT3G49490 unknown protein Potri.012G007000
[exp]
7.74 0.8851
AT5G13520 peptidase M1 family protein (.... Potri.010G215700
[exp]
7.74 0.8752
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Potri.008G078500
[exp]
8.30 0.8917
AT3G18370 NTMCTYPE3, ATSY... C2 domain-containing protein (... Potri.012G056000
[exp]
10.58 0.8677
AT1G06230 GTE4 global transcription factor gr... Potri.013G118900
[exp]
10.77 0.8874

Potri.014G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.