Plant FIBer expression Database

Potri.014G117500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01935 285 / 2e-97 unknown protein
AT4G01915 76 / 4e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010062
[exp]
294 / 1e-100 AT4G01935 302 / 6e-104 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07281 INSIG Insulin-induced protein (INSIG)
Representative CDS sequence
>Potri.014G117500.1 pacid=42762686 polypeptide=Potri.014G117500.1.p locus=Potri.014G117500 ID=Potri.014G117500.1.v4.1 annot-version=v4.1
ATGCAAGGCCTCATTGCTTTGAGGAGCTCTCCATGCTTTCTTCACAGTTGCCCTCGCAATTCCAATACAAAACATCTTGTATCTAAACCTCATAGCAGTT
TAAGAAAGCGAAGCACAAGTAGTCTAAGAAGCACTTTGCCGTCCATTTCCCTCTCGCTTTTCGGTTCAGGGTTCTTCTTAGGTCCCCTCATCGATGGACT
TCACTCAAGAGTGAATCTCGTGGTATACCAAAATGGGTCAATCGACATCGGTCCTCTTCACACAAACATTTGGGTTCCTCCCTTGCTTGGATTGTTTTAC
TGCTCTGTTGGGTTGCTGCAACTGTTCTTGGATCAGAGGGCACCTTCGAAGGTTCCAGAAGGAAGCCCAGAGAAAACAGCAATTGCGTTAGTAGCACTGT
TGCTATTCATCGAATTGAGTGCTGAAATGTATAGAGCTGGAATAGCAGACAACATCGAGGCTTACATATTATTTGCATTAGCAGAATTGATATGGTTTTA
CCTGGACAGAACATGGATTGGATTCACCCTGGCTTCCATCATAGGCCTCTGCTGTCCGCTAGCTGAAATTCCCATAATGAAGTTGTTCCACCTTTGGTAT
TACCCACAAGCAAACATTGAGATCCTTGGTCAGGGTTTAGTCACTTGGACAACCACTTGCTACTTTGTTTACACACCATTTCTGATCAGTTTATCACGCT
GGTTGAGATCAATGATAACTCCTCCCAACAAGTCTGCTTAG
AA sequence
>Potri.014G117500.1 pacid=42762686 polypeptide=Potri.014G117500.1.p locus=Potri.014G117500 ID=Potri.014G117500.1.v4.1 annot-version=v4.1
MQGLIALRSSPCFLHSCPRNSNTKHLVSKPHSSLRKRSTSSLRSTLPSISLSLFGSGFFLGPLIDGLHSRVNLVVYQNGSIDIGPLHTNIWVPPLLGLFY
CSVGLLQLFLDQRAPSKVPEGSPEKTAIALVALLLFIELSAEMYRAGIADNIEAYILFALAELIWFYLDRTWIGFTLASIIGLCCPLAEIPIMKLFHLWY
YPQANIEILGQGLVTWTTTCYFVYTPFLISLSRWLRSMITPPNKSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01935 unknown protein Potri.014G117500
[exp]
0 1
AT1G77090 Mog1/PsbP/DUF1795-like photosy... Potri.002G072400
[exp]
2.64 0.9310
AT5G59400 unknown protein Potri.001G241400
[exp]
4.79 0.9143
AT5G46110 TPT, APE2 triose-phosphate ⁄ phosp... Potri.011G057800
[exp]
8.48 0.9361 APE2.1
AT3G18000 XPL1, NMT1, XIP... XIPOTL 1, N-METHYLTRANSFERASE ... Potri.019G089700
[exp]
10.58 0.9368
AT5G57040 Lactoylglutathione lyase / gly... Potri.018G056200
[exp]
12.76 0.9382
AT2G28605 Photosystem II reaction center... Potri.007G100800
[exp]
13.03 0.9112
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G219000
[exp]
18.11 0.9256
AT3G55040 GSTL2 glutathione transferase lambda... Potri.008G046800
[exp]
25.39 0.9081
AT1G74470 Pyridine nucleotide-disulphide... Potri.012G068801
[exp]
25.69 0.9322
AT5G25630 Tetratricopeptide repeat (TPR)... Potri.018G037200
[exp]
31.28 0.9231

Potri.014G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.