Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 330 / 3e-105 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62930 313 / 2e-100 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 310 / 3e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 306 / 1e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 306 / 3e-97 RPF2 rna processing factor 2 (.1) AT1G62910 305 / 8e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 300 / 2e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 300 / 5e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 300 / 3e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 300 / 4e-95 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130600 [exp] 580 / 0 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G068400 [exp] 431 / 8e-149 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G047400 [exp] 420 / 3e-143 AT1G63080 341 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 420 / 4e-142 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 409 / 2e-137 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 399 / 5e-134 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 394 / 5e-132 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 394 / 6e-132 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 392 / 9e-131 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022861 [exp] 369 / 4e-122 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 350 / 5e-115 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 343 / 5e-112 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 342 / 1e-111 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 337 / 1e-108 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024962 [exp] 328 / 2e-107 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042768 [exp] 333 / 5e-107 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10021074 [exp] 321 / 4e-106 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014247 [exp] 322 / 3e-104 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014242 [exp] 305 / 2e-99 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G117600.2 pacid=42764603 polypeptide=Potri.014G117600.2.p locus=Potri.014G117600 ID=Potri.014G117600.2.v4.1 annot-version=v4.1 ATGGCGGCGATGGTGATTTTTCAGGCCCTTGTTAAATTTCGTCTTCAACAGCAAATAGGTATCATGGGCTTCTTTTTTTCTTCTTTCAGCAGCGGCAGCG GGCATAACAAGGTATGGTTTAAAGACAAGGATGATGCTTTAGCATCCTTCAGGCTCATGCTTCTTAGGAAACCTCTGCCTTGTATAGTCGAATTTAGTAA ATTGTTTTCATCAATTGTTAGAATGGGACATTATGAGACCGTGGTTTATTTGTCCAAAGAAATAGAATTTCTAGGAATCGAACAGGATATACATAGTTTA AGTATATTGATTAATTGCTTCTGCCATTTACATCGCGTTGATTTTGGGTTGTCTGTTTTGAGCAAAATCCTTAAGCTTGGGTTGGAACCTAGTATTGTAA CCTTTACTACCTTATTGAATGGGCTTTGTATGGAGGGAAAAATGGATCAAGTTATGATGTTGTATGACGATATGCTGGTGAGAGGTCTTCAACCCAATGT ATATACTTATAATGTGATAATCAACAGTCTTTCTAAAAGTGGGAAAGCCAATGAGGCGCTTGGGTTTCTTAAGCAAATGGAAAAGGTAGGTTGTGTGCCA AATGTTGTTAATTACAGTACACTGATTGATGGGTATTGCTTGCGAGGGCAAATGGATGAAGCTAGAAGCGTATTTGATTTAATGGTGAGTAAGGGCTGCA CGCCTAATGTTTATACTTACACTAGTTTGATGAATGGATACTGTAAGATCGAAAGGATTGAGGAGGCAGTGCAACTTCTTGATGAAACGTTGAGAAAAGG TTTAGTTCCTGACATAGTTACTTTTACTACTATCATAAGTGGCTTGTGTCGAGCAGGGAGACCTTTGGCTGCACAACAGCTTTTCAGGTACATCTGTGCA CATGGCCACACGCCAAATATAATGACTTACGGAGTGTTGCTTGATGGCCTGTGCAAACATGGGAATCTTGAAGAGGCATTTGCTCTATTTCAAGAGATGC AAAGGAGCACTGTGAAACCTAACTTGGTAATCTACACCATCCTCATTGATAGTTTGTGCAAGTGTGGGAAGATTAAGGATGGAAAGGAATTGTTTTCTAG ACTAATTGACGAAGGATTGAAGCCTAATGTTTATACATACACTGCATTAGTTGGTGCACTTTGCAAAGAAGGACTAATAATTGAAGCACACAAGCTTTTT AGAAAAATGGAAGAGGATGGATGTACACCTGACAAATGCGCCTATAATGTCATTATCCAAGGATTTCTCCAACACAAGGATCCATCAATGGCAAGGCAAC TTGTGGAAGAAATGGTCAATCGGGGATTCTCTGCAGATGCTGCCACCAGAGCCTTGCTGAATGATTTTCCCACTAACGACATTCCTGCTCTAAAAACTTT AATAGGGTTTTGTGAGGATCATTGA
AA sequence Show only first row Show all	>Potri.014G117600.2 pacid=42764603 polypeptide=Potri.014G117600.2.p locus=Potri.014G117600 ID=Potri.014G117600.2.v4.1 annot-version=v4.1 MAAMVIFQALVKFRLQQQIGIMGFFFSSFSSGSGHNKVWFKDKDDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSL SILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVP NVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICA HGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLF RKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALLNDFPTNDIPALKTLIGFCEDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.014G117600 [exp]	0	1
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	4.24	0.8153
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	7.74	0.7988
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	12.84	0.8018
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	14.42	0.7919
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.017G065900 [exp]	14.96	0.7831
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	16.09	0.7592	UBP25.1
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	21.02	0.7815	ATRH1.1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	21.16	0.7629
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	22.36	0.7906
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.018G125171 [exp]	23.08	0.7855

Compare expression of checked genes

Potri.014G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.