Plant FIBer expression Database

Potri.014G117700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01940 248 / 2e-83 ATCNFU1, NFU1 NFU domain protein 1 (.1)
AT5G49940 100 / 5e-26 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
AT4G25910 87 / 9e-21 ATCNFU3, NFU3 NFU domain protein 3 (.1)
AT1G51390 49 / 5e-07 ATNFU1, NFU5 NFU domain protein 5 (.1)
AT3G20970 49 / 8e-07 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G192200
[exp]
358 / 3e-127 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1)
Potri.004G222600
[exp]
104 / 2e-27 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
Potri.003G009300
[exp]
101 / 4e-26 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
Potri.006G165600
[exp]
88 / 3e-21 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1)
Potri.010G237400
[exp]
50 / 4e-07 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009999
[exp]
261 / 1e-88 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1)
Lus10015481
[exp]
101 / 4e-26 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
Lus10001634
[exp]
89 / 5e-21 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1)
Lus10001439
[exp]
87 / 7e-21 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1)
Lus10025018
[exp]
82 / 1e-19 AT4G01940 79 / 7e-19 NFU domain protein 1 (.1)
Lus10034140
[exp]
49 / 8e-07 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Lus10043440
[exp]
49 / 1e-06 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0232 NifU PF01106 NifU NifU-like domain
Representative CDS sequence
>Potri.014G117700.5 pacid=42762770 polypeptide=Potri.014G117700.5.p locus=Potri.014G117700 ID=Potri.014G117700.5.v4.1 annot-version=v4.1
ATGGCATCTTTGGCGTCAACGGCGCTGCCCAAAATCCTACCTTCTTGTCCGAAAATCCCATCAATCATTTCGCGTCCATGCCCACCCCAATCCTTAACCA
CTAAACAACGCATACCACTTGTTGGAATTGGAAGAAGGATCTTCCAAAAAACTGCCATTAAAGCGACAGCGCCCACTGGTTCCTCATCTCCAGGACTGCA
CTCGGCCCAGCAATTCGAGCTCAACCCTCAAAACGTAGACCTTGTTCTAGAGGAGGTTCGGCCTTACTTGATTTCTGATGGTGGAAACGTCGATGTTGTG
TCTGTTGAAGATGGTGTTATCACTCTCAAACTCCAAGGAGCATGTGGGAACTGTGCTAGCTCAGAAACCACCATGAAAATGGGAATTGAAAGAGTTCTTA
AAGAAAAATTTGGAGATGCTGTTCAAGATATTCGCCAATTATCTTTCGAAGAACCAAAGGAGACAACCGTTGAGGCAGTAAATGATCATCTGGATATACT
GAGACCAGCTATTAAAAACTTTGGGGGGAGCGTGGAAGTGCTATCTGTTGAGAATGGGGGATGCCGTGTTGAGTACACGGGACCTGAGTCTATTGGTTCA
GGAATCAAAGCAGCCATCAAGGAGAAGTTTCCAGACATTGTGGATGTTGTTTTTGTTGGCTAG
AA sequence
>Potri.014G117700.5 pacid=42762770 polypeptide=Potri.014G117700.5.p locus=Potri.014G117700 ID=Potri.014G117700.5.v4.1 annot-version=v4.1
MASLASTALPKILPSCPKIPSIISRPCPPQSLTTKQRIPLVGIGRRIFQKTAIKATAPTGSSSPGLHSAQQFELNPQNVDLVLEEVRPYLISDGGNVDVV
SVEDGVITLKLQGACGNCASSETTMKMGIERVLKEKFGDAVQDIRQLSFEEPKETTVEAVNDHLDILRPAIKNFGGSVEVLSVENGGCRVEYTGPESIGS
GIKAAIKEKFPDIVDVVFVG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01940 ATCNFU1, NFU1 NFU domain protein 1 (.1) Potri.014G117700
[exp]
0 1
AT3G57990 unknown protein Potri.001G145400
[exp]
4.24 0.9589
AT1G69935 SHW1 short hypocotyl in white light... Potri.008G190900
[exp]
5.29 0.9649
AT5G65250 unknown protein Potri.005G073500
[exp]
7.93 0.9399
AT3G15780 unknown protein Potri.001G192500
[exp]
9.79 0.9444
AT2G21195 unknown protein Potri.019G071800
[exp]
11.83 0.9382
AT1G48330 unknown protein Potri.010G004000
[exp]
12.12 0.9310
Potri.005G063600
[exp]
16.06 0.9525
AT5G53330 Ubiquitin-associated/translati... Potri.012G033300
[exp]
16.24 0.9394
AT3G27750 EMB3123 EMBRYO DEFECTIVE 3123, unknown... Potri.003G051400
[exp]
16.58 0.9546
AT5G06280 unknown protein Potri.016G072500
[exp]
17.20 0.9251

Potri.014G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.