Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11420 195 / 1e-52 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G26540 194 / 5e-52 Agenet domain-containing protein (.1) AT2G47230 191 / 1e-50 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G03300 168 / 2e-43 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT3G62300 167 / 9e-43 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G09320 141 / 3e-35 agenet domain-containing protein (.1) AT2G47220 118 / 7e-28 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT5G23770 112 / 3e-26 ATDUF8 DOMAIN OF UNKNOWN FUNCTION 724 8 (.1.2) AT5G23800 110 / 4e-25 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1) AT3G06520 104 / 2e-23 agenet domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192300 [exp] 1333 / 0 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.005G011100 [exp] 149 / 2e-39 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 140 / 4e-36 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G151200 [exp] 76 / 8e-16 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.009G155250 [exp] 59 / 2e-10 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.010G149301 [exp] 54 / 2e-08 AT3G06520 71 / 1e-15 agenet domain-containing protein (.1) Potri.001G365800 [exp] 57 / 5e-08 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.016G007500 [exp] 50 / 9e-06 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.006G017400 [exp] 49 / 2e-05 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004508 [exp] 434 / 2e-137 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10010060 [exp] 429 / 6e-136 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10002437 [exp] 266 / 3e-77 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10000615 [exp] 142 / 2e-35 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017088 [exp] 141 / 2e-35 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10000353 [exp] 142 / 2e-34 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037805 [exp] 136 / 8e-34 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10000430 [exp] 114 / 7e-27 AT3G62300 84 / 3e-17 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10027325 [exp] 75 / 2e-15 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10009266 [exp] 68 / 1e-12 AT1G06340 86 / 2e-21 Plant Tudor-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05266 [poplar] [flax] DUF724 Protein of unknown function (DUF724) CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.014G117800.1 pacid=42764723 polypeptide=Potri.014G117800.1.p locus=Potri.014G117800 ID=Potri.014G117800.1.v4.1 annot-version=v4.1 ATGGCAGGCTTAGATTCGAATCCCCAACCCCAACAAAACCCTCATCAGCAAAACCAGACCAGCACGGTGTTCTTCAACAAGGGCGAGGAAGTAGAAGTAA GCAGTGAGCAGGAAGGTTTTAGGGGTGCATGGTATTTAGCTACCATTTTAGATTTCCCAACACCATCACAACCACAATCAGCCTCGGAGAAGAAAAGGAA AGCGATTGTTCAGTACAAAACTTTGGTTACTGAAGACGGGCCTGCTCCTTTGTTAGAACAAGTCGACCCTCAACTCATTAGGCCTTTGCCTCCTCAAGAT TCGCTTAAAAATGGCGGGGTTTTTCAAGAAAACGAAGCCATTGATGCAAGTCTTAGATATGGCTGGTGGTCTGGTGTTGTAAAGAAGGTTCTTGATAGGG GGGCAAGATATATGGTTTATTTTGATAACCCTCCTGATGTTCTTGATTTTGATGCCAAAGATTTAAGGATTCACTTGGATTGGGTTGATGGCAAATGGGT CCGACCCGAAATGCAGCAGCAAGCAACAGGGTCGGTTTTTAGCTCAGGAACTGAAGTAGAAGTGAACCTTGAAAAAGATAATGTACGTGATATTTGGTTA CCTGCAGTTGTCGTCAAGGAAAATGAGGATAGAACTTTCTTGGTAAAGTGTCAAAGCTCATGGAATAGTGATGAGGCCGGAACAATGAAAACAATTGTAG ATTCCCTTCACATTCGGCCCACTCCTCCTCATGCAGACAGAAATTATGAGTTGCTGGAAAGGGTAGATGCACACTATGGAAGTGGTTGGAGATCTGGAGT AATTACAAAACTTCTTGCTGGGAGGAGATACAATGTCTTTTTTAAGCAGGGAAATGAGGACAGGGAACTTAGTCAATCGAAGATAAGGCCTCATATGGAA TGGGTTGATGGAAAATGGATTAGTAAAAAGGAAGTTAGAATTCTTTCTGATAGTCGAGGACAGTTTGGTAGCACCAACAACAATAAAAACCCTGATGTGG CAGAACTACACAAAAGCTCAAGTGCTTCCGAAGATAAGACCAAAGAGAAAACAGTTTCCACTAGCATAAGAAATATGCCAGAGCAATCAACTCATTTGGG TGAAAAATCAGCGAAGAAGCCAAAGCCAACACTTTTTAATTGTAGTGGCATGCGTTCAAACCCTTCCAGTATGCTAATTGAAATAGATGCTACTGAGGCC CCATTATCAGTTTCAGCACTGCAGTCTAGGAATATCCCAATTGAAATGTCAAGTAATGAAATGCTTTGCGGTTTTACCTCTTCAAAAACAGGAGGTAAAA GAACAAGATGCATAGAAAAACTTGTTGATGCTCAGCCTTCTAACAAAACCGAGAATTCTTCTGCAGGAAAGGCAACTATGCAGAAGACTAAGCAACTGAA AGTACTTGAATTGGACTGCCAGAAAGTGGAAATTATAACAAGGATAGGGAGAGTCACCAAATCGCCATTTAGAAGTCCAAATGCTTCAGCAGCAGTGAAG GATGGCAATGCAGTGGACGTTGCTGTCCAAGGCATTAGTGAGATTGACTTTAAAACAAAAGAAATTGAAGTCCCTTTCATCATGGGATTAAAAGCTACAG AGGGCATTTATCAGGATGACAAGGAAACACTGAAGCTTCTGAGGGATCAGAAGAAGAGTTTGAATGATTCAGCAAAAGACAAGAACTTGGAACATGTAGG AAGCAGTCAAAGAAGAAAGAGGGGAAGGCCGTGCAAATTAACTATAAACTCAAAGGCTTCGGTGACTAGTCGGGAGGACCTTGGCTCTGGGGACATTGCT GATGAAGTTGTACAAGTGGTTGTGAAAGACCTTACAACTAATGAAGTTGAGTGGCTGACACAGGCAAGGATGGAACCTAAAGTTTCTCAAAATTCTTCAA GAGAGAGAACCAGTGAAGTTTCCAAGACAGATTTCATGTCAAGGGAAGTTGATGCAGCTGTTGCTGCTGCATCGAAGAATGTAGCTGACGATGATCAACC TCTATCAACCTGGTTTGGGGGAGTGCATGCTTCAACAAGTCTTGGAGAACTAAGATCATCTACTGGTAGGGCTGCAAGTGGAGGGAGTGAGGCTAGAGAA AAACAAGCTGTAGCAGTGGAATCTTGTACAATCGATGCAAAAGGCAATGACACTCTGGTGGAAAATCAGTCTGTACCTTTTGTAAAGAGGTCTCCAGTTT GGAACACGATTGAATCTATGGAAGTATTCCGAGCCATCCCGCAAAAACTGCATTTTCATCCTTTGACTGAATGTAAAGAAGAGTATCGTGAAGGATCAGC CATTGGTATTATGGTAACATTTGCTAGTTTGTTTGATAAGATAACCTCACTTCAGTTTGATGATTGTAGAAGCATATTAGAGAGCACATTGGAAAGTCTT CTTGACTTGGAGAAGCATGGATTTGATATCACTGTGCCACGTGGTAGGTTGAATGAATTGCTTTCAATTAAAGATGGGCAAGGGGAGGTACTAAATGAAT CCAAAGATGCTGAAGGGAAATTACGAGTGCATACTGATGAGAAAAGAAAGCTGGAAGAGAAGAGGAACGATATTGAAAAGAAGATTACTGAGCTACAGGA AGAACTTGCTTTAACCAAGGCAAAGATGGGGATTAAGAACCTTGATCTTTCCAAGTTGCAATCCCATGCTAATGCCATAAATGAACGGATTAAAAATGCT CGGGATCATTTCGGAAAAGTAGCCTCTGCCCCTTGGAACCCGCCCTGA
AA sequence Show only first row Show all	>Potri.014G117800.1 pacid=42764723 polypeptide=Potri.014G117800.1.p locus=Potri.014G117800 ID=Potri.014G117800.1.v4.1 annot-version=v4.1 MAGLDSNPQPQQNPHQQNQTSTVFFNKGEEVEVSSEQEGFRGAWYLATILDFPTPSQPQSASEKKRKAIVQYKTLVTEDGPAPLLEQVDPQLIRPLPPQD SLKNGGVFQENEAIDASLRYGWWSGVVKKVLDRGARYMVYFDNPPDVLDFDAKDLRIHLDWVDGKWVRPEMQQQATGSVFSSGTEVEVNLEKDNVRDIWL PAVVVKENEDRTFLVKCQSSWNSDEAGTMKTIVDSLHIRPTPPHADRNYELLERVDAHYGSGWRSGVITKLLAGRRYNVFFKQGNEDRELSQSKIRPHME WVDGKWISKKEVRILSDSRGQFGSTNNNKNPDVAELHKSSSASEDKTKEKTVSTSIRNMPEQSTHLGEKSAKKPKPTLFNCSGMRSNPSSMLIEIDATEA PLSVSALQSRNIPIEMSSNEMLCGFTSSKTGGKRTRCIEKLVDAQPSNKTENSSAGKATMQKTKQLKVLELDCQKVEIITRIGRVTKSPFRSPNASAAVK DGNAVDVAVQGISEIDFKTKEIEVPFIMGLKATEGIYQDDKETLKLLRDQKKSLNDSAKDKNLEHVGSSQRRKRGRPCKLTINSKASVTSREDLGSGDIA DEVVQVVVKDLTTNEVEWLTQARMEPKVSQNSSRERTSEVSKTDFMSREVDAAVAAASKNVADDDQPLSTWFGGVHASTSLGELRSSTGRAASGGSEARE KQAVAVESCTIDAKGNDTLVENQSVPFVKRSPVWNTIESMEVFRAIPQKLHFHPLTECKEEYREGSAIGIMVTFASLFDKITSLQFDDCRSILESTLESL LDLEKHGFDITVPRGRLNELLSIKDGQGEVLNESKDAEGKLRVHTDEKRKLEEKRNDIEKKITELQEELALTKAKMGIKNLDLSKLQSHANAINERIKNA RDHFGKVASAPWNPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	1.00	0.9003
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	1.41	0.8592
AT5G17510			unknown protein		Potri.019G042800 [exp]	3.87	0.7940
AT5G63550			DEK domain-containing chromati...		Potri.015G100700 [exp]	4.47	0.7984
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	4.89	0.7871
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.018G047700 [exp]	6.48	0.7576
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.016G079200 [exp]	6.70	0.8008
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.012G133600 [exp]	9.69	0.7240
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.008G219100 [exp]	10.48	0.7162
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	10.67	0.7530	PFT1.1

Compare expression of checked genes

Potri.014G117800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.