Plant FIBer expression Database

Potri.014G118100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62330 424 / 1e-145 Zinc knuckle (CCHC-type) family protein (.1)
AT5G22040 50 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G192800
[exp]
726 / 0 AT3G62330 468 / 1e-162 Zinc knuckle (CCHC-type) family protein (.1)
Potri.008G015500
[exp]
52 / 2e-07 AT5G22040 150 / 9e-44 unknown protein
Potri.008G001700
[exp]
52 / 4e-07 AT5G22040 155 / 7e-46 unknown protein
Potri.010G244600
[exp]
50 / 2e-06 AT5G22040 162 / 3e-48 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010000
[exp]
452 / 1e-156 AT3G62330 421 / 3e-144 Zinc knuckle (CCHC-type) family protein (.1)
Lus10025019
[exp]
443 / 7e-153 AT3G62330 415 / 1e-141 Zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.014G118100.1 pacid=42763112 polypeptide=Potri.014G118100.1.p locus=Potri.014G118100 ID=Potri.014G118100.1.v4.1 annot-version=v4.1
ATGGCAACACGGCCGGATCCAGATATCGACGATGATTTTAGTGAGATTTACAAGGAGTATACTGGTCCTCCAGGCTCTACAGTCAATAGTGCACATGATA
TGGCAAAAATAAATAAAAGGTCCCATGTGGACTCTGATGAGGAAGAGGAAACTCCTGACCCAAATGCTGTCCCAACTGATTTTACGAGCCGAGAAGCAAA
GTTTTGGGAAGCTAAATCCAAGGCTACTGAGCGGAATTGGAAGAAGAGGAAAGAGGAAGAAATGATTTGTAAAATATGTGGGGAATCGGGTCATTTTACT
CAGGGATGCCCCTCTACTCTTGGGGCTAATCGCAAATCTCAAGATTTCTTTGAAAGGGTTGCAGCAAGGGACAAGCATATAAAAGCTCTATTTACTGAGA
AAGTGATACAGGGTATCGAGAAGGACATATGTTGTAAAATCAAAATAGAGGAGAAATTTATAATTGTTAGCGGGAAGGATAGGTTAATTTTGGCGAAAGG
TGTTGATGCTGTGCACAAGGTGATCAAGGGGGAGGGTGATCAGAAGGGCTCTTCTAGTTCCCACAAGAGTAGATCTAGGTCCCCTGAGAGAAGCCCTGTT
GGTTCACGGCTGCTACACTCTGATTCCCAAAGGTCTTATCCAGGTCACCCACATGATACATCACGATATCAACAGAGGTTTGGAAGACAAGATAAGATTA
AGGGAGACCGTCGTGAGGATCTGAATAAATTCTCAAGGGGTTCTCCACAAGCTTATGGTAATGATGGAGGTAGAAGTCACTCAAGCCGTTCTAAATCTCC
TGCACGTCCCCTTTATGCTGGCAACTCTTATGGCTCACATGATGGTCATGGTCATAGCACGGCTGGTTATAGAACTGCAGGACGGGATATTGAGAGGCAG
GGGTCTGATTTGCAATCAGGCCATCAGTTTGATTACTCTACTTTCCCGCAGATGTTAGAAGAACTGGAGTTAGAGTACAAGAGAGATGCAATGGAGCTTT
CTAGAATTCGTGACAAAGAAGAAGATGAAGAAAATTACAAGCATCGTGAGACTATCAGGGAAATTGGAGAGAACTACGTGCAGAGATTGGCTATTCTAAG
GGGCACACACACAAGACAGTGGGAGGAGTTTCTTGAATGCAATGCCCAAATGCATCAGCAACAACCAAGGCAGCCAATTTCCGTGTCTGGTTTTGGTGGC
CATAAACAGCACTCTTATTCTGAATATGATGGTTCTTCAGCCAATCCTTATTATGCTGGAAACAGTTTACACATGGATTCAAGGGCTAGGTGCTCAAATG
ACATGGAAAACTATTCTTCAAGACCTCATGATACATATGATGAGTTCCAGCATCAGAGGCGCGAGGCTTTTGGGAAAGCGTACAATCGATACTAA
AA sequence
>Potri.014G118100.1 pacid=42763112 polypeptide=Potri.014G118100.1.p locus=Potri.014G118100 ID=Potri.014G118100.1.v4.1 annot-version=v4.1
MATRPDPDIDDDFSEIYKEYTGPPGSTVNSAHDMAKINKRSHVDSDEEEETPDPNAVPTDFTSREAKFWEAKSKATERNWKKRKEEEMICKICGESGHFT
QGCPSTLGANRKSQDFFERVAARDKHIKALFTEKVIQGIEKDICCKIKIEEKFIIVSGKDRLILAKGVDAVHKVIKGEGDQKGSSSSHKSRSRSPERSPV
GSRLLHSDSQRSYPGHPHDTSRYQQRFGRQDKIKGDRREDLNKFSRGSPQAYGNDGGRSHSSRSKSPARPLYAGNSYGSHDGHGHSTAGYRTAGRDIERQ
GSDLQSGHQFDYSTFPQMLEELELEYKRDAMELSRIRDKEEDEENYKHRETIREIGENYVQRLAILRGTHTRQWEEFLECNAQMHQQQPRQPISVSGFGG
HKQHSYSEYDGSSANPYYAGNSLHMDSRARCSNDMENYSSRPHDTYDEFQHQRREAFGKAYNRY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G62330 Zinc knuckle (CCHC-type) famil... Potri.014G118100
[exp]
0 1
AT2G24030 zinc ion binding;nucleic acid ... Potri.006G182601
[exp]
1.73 0.8821
AT3G04980 DNAJ heat shock N-terminal dom... Potri.013G029500
[exp]
2.00 0.9264
AT4G23840 Leucine-rich repeat (LRR) fami... Potri.001G092000
[exp]
3.16 0.8674
Potri.001G145750
[exp]
4.69 0.8664
AT2G48100 C2H2ZnF Exonuclease family protein (.1... Potri.002G215700
[exp]
5.65 0.8703
AT5G48030 GFA2 gametophytic factor 2 (.1) Potri.001G271300
[exp]
6.48 0.8718 Pt-GFA2.2
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Potri.001G138900
[exp]
7.48 0.8798
AT4G25080 CHLM magnesium-protoporphyrin IX me... Potri.015G105702
[exp]
7.93 0.8468
AT2G16880 Pentatricopeptide repeat (PPR)... Potri.008G044000
[exp]
8.12 0.8865
AT1G54380 spliceosome protein-related (.... Potri.007G124150
[exp]
8.94 0.8751

Potri.014G118100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.