Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47270 62 / 2e-13 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) AT2G42870 51 / 4e-09 PAR1 ,HLH1 HELIX-LOOP-HELIX 1, phy rapidly regulated 1 (.1) AT3G58850 46 / 4e-07 HLH2, PAR2 phy rapidly regulated 2 (.1) AT4G30410 38 / 0.0008 sequence-specific DNA binding transcription factors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G193300 [exp] 185 / 2e-61 AT2G47270 79 / 5e-20 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G060100 [exp] 54 / 7e-10 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1) Potri.005G201500 [exp] 52 / 5e-09 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.017G093000 [exp] 44 / 3e-06 AT5G39240 64 / 3e-14 unknown protein Potri.002G232500 [exp] 42 / 4e-05 AT2G43060 79 / 1e-18 ILI1 binding bHLH 1 (.1) Potri.014G149800 [exp] 40 / 0.0001 AT2G43060 82 / 3e-20 ILI1 binding bHLH 1 (.1) Potri.004G119600 [exp] 38 / 0.0004 AT5G39240 60 / 6e-13 unknown protein Potri.018G090200 [exp] 38 / 0.0008 AT2G18969 98 / 2e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002419 [exp] 64 / 5e-14 AT2G47270 67 / 4e-16 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Lus10001447 [exp] 62 / 2e-13 AT2G47270 69 / 2e-16 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Lus10025511 [exp] 40 / 8e-05 AT2G43060 98 / 9e-27 ILI1 binding bHLH 1 (.1) Lus10026730 [exp] 40 / 0.0001 AT2G43060 97 / 4e-26 ILI1 binding bHLH 1 (.1) Lus10030844 [exp] 38 / 0.0003 AT1G23965 48 / 2e-08 unknown protein Lus10030641 [exp] 37 / 0.001 AT1G23965 42 / 3e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G118300.1 pacid=42762568 polypeptide=Potri.014G118300.1.p locus=Potri.014G118300 ID=Potri.014G118300.1.v4.1 annot-version=v4.1 ATGGGAGTTTCAGCAGGCGAACATTCTCTTCTTGTTTCTTTCAAGGGTAAGGTCCAGGGAAATGAAGAAATGGTGCACAAGTCAAACGAGACTCTGTGGG AAAACGTCATGGAAGGACAAGCCAAGAGAAGATGCCCACCGAGGAAACACAAACACGGACGACATGCCGAGGGCAAGAGACCTAGAAGGATTTTGATGAA GAGAATGGCACGTGTAGAAGGTTCTACTAGAAGGGCTGGGTATGGTGTTGGGAGAAGAGTTAGAACCCTGAAGAAGCTCATTCCTAATGGCGAATCCTTG GGATTGGATGGGCTTTTCAGAGAGACAGCTGATTACATTTTGTCTTTGCAGACGAGAGTGAAAGTCATGCAGATAATGGTTAAGGAATTAACAGGTTCGG ACGAGTAG
AA sequence Show only first row Show all	>Potri.014G118300.1 pacid=42762568 polypeptide=Potri.014G118300.1.p locus=Potri.014G118300 ID=Potri.014G118300.1.v4.1 annot-version=v4.1 MGVSAGEHSLLVSFKGKVQGNEEMVHKSNETLWENVMEGQAKRRCPPRKHKHGRHAEGKRPRRILMKRMARVEGSTRRAGYGVGRRVRTLKKLIPNGESL GLDGLFRETADYILSLQTRVKVMQIMVKELTGSDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.014G118300 [exp]	0	1
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.010G082600 [exp]	1.73	0.7969
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Potri.005G138900 [exp]	3.31	0.7282
					Potri.017G018100 [exp]	3.74	0.8252
					Potri.017G018200 [exp]	4.79	0.8280
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.004G136000 [exp]	10.90	0.7608
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248950 [exp]	13.03	0.7360
AT2G04100			MATE efflux family protein (.1...		Potri.004G094800 [exp]	22.44	0.7946
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.002G017900 [exp]	36.82	0.7742	ATEXPA11.2
AT1G14540			Peroxidase superfamily protein...		Potri.001G458900 [exp]	38.30	0.6021
AT1G71140			MATE efflux family protein (.1...		Potri.004G094900 [exp]	44.27	0.7459

Compare expression of checked genes

Potri.014G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.