Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31400 1211 / 0 GUN1 genomes uncoupled 1 (.1) AT1G74850 288 / 5e-84 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 268 / 3e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 209 / 1e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 210 / 3e-57 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 209 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 205 / 8e-56 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12700 205 / 1e-55 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62670 203 / 1e-55 RPF2 rna processing factor 2 (.1) AT3G22470 200 / 1e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G193900 [exp] 1640 / 0 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 291 / 2e-85 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.009G092100 [exp] 246 / 3e-69 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 240 / 3e-67 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 229 / 3e-63 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 204 / 4e-56 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 203 / 6e-56 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G019000 [exp] 204 / 1e-55 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G038400 [exp] 203 / 1e-55 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022290 [exp] 1036 / 0 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10003657 [exp] 1025 / 0 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10033127 [exp] 288 / 7e-84 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 257 / 1e-72 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 253 / 6e-72 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006962 [exp] 218 / 2e-59 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 211 / 3e-57 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 211 / 7e-57 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 209 / 1e-56 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 207 / 3e-56 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.014G118500.1 pacid=42763370 polypeptide=Potri.014G118500.1.p locus=Potri.014G118500 ID=Potri.014G118500.1.v4.1 annot-version=v4.1 ATGGCGTCAACGCCACCACACTGCTCAATCACGGGAACAACTAAGCCTTATCATAACAACCCCTATCCACACAGCCATTTTAAAAACCACCGTCAAACCC ACCACCAAAACCCCCATCAAAGATGGACTGCTAATCAAAGAGTCTCTCTTACCAAACCTCCCCTCCCTCCCTCATCTCGCAATGCACCAAAACCCCCCGC CACCACCACCACCACCACCACCACCCACCACCCACAAATCCACCCTACCTTCCCTTCTCTTCAATCTCCAAAATCCGAACTTGCCTCCGATTTCTCTGGT CGCCGCTCCACCCGCTTCGTTTCCAAGCTCAACTTCGGGCGACCTAGAACCACTATGGGTACTCGCCACACCTCAGTCGCCGAAGAAGCTCTCCAGAACG TAATTGAGTATGGGAAAGACGAGGGGGCTCTTGAAAACGTGTTGCTTAATTTCGAGTCTCGTCTTTCTGGGTCGGATGATTATATTTTCTTGCTTCGGGA GCTTGGTAATCGAGGAGACTGTAAAAAAGCCATTTGTTGCTTTGAATTTGCAGTGAAACGAGAGAGGAAGAAGAACGAACAAGGAAAATTGGCGAGTGCC ATGATTAGCACTCTTGGTAGGTTAGGTAAAGTAGAGATTGCTAAGAGTGTTTTTGAGGCTGCTCTTATTGAAGGTTATGGTAATACTGTTTATGCTTTCT CTGCTATAATCAGTGCTTATGGTAGAAGCGGTTATTGTGATGAGGCTATTAAGGTTTTTGATTCGATGAAACATTATGGTTTGAAGCCCAATTTGGTTAC TTATAATGCTGTAATCGATGCGTGTGGGAAAGGGGGTGTGGAGTTTAAACGAGTAGTGGAGATTTTCGATGAAATGTTGAGAAATGGAGTGCAGCCAGAT CGAATTACATTTAATTCGCTTCTTGCTGTGTGTAGTAGAGGAGGGTTGTGGGAGGCTGCGAGGAGTTTGTCCAGTGAGATGTTGAATAGAGGGATTGATC AAGATATTTTTACTTATAATACGCTTTTGGACGCCGTTTGTAAAGGTGGGCAAATGGACATGGCTTTTGAGATCATGTCTGAGATGCCTGCCAAGAATAT ATTGCCTAATGTTGTCACTTATAGTACCATGATTGATGGCTATGCTAAGGCTGGTAGATTTGATGATGCACTTAATTTGTTTAATGAAATGAAGTTTCTG TGTATAAGTTTGGATAGAGTTTCTTATAATACCTTGCTTTCTATTTATGCTAAGCTTGGTAGGTTTCAGGAAGCTTTGGATGTTTGTAGGGAGATGGAAA ATTGTGGGATTAGGAAAGATGTTGTGACTTATAATGCACTTTTGGGTGGATATGGGAAACAATGCAAGTATGATGAGGTTAGAAGAGTGTTTGGAGAGAT GAAAGCTGGGCGTATATCACCTAATTTACTAACTTACTCAACATTAATTGATGTGTATTCGAAAGGTGGTTTGTATAGGGAAGCAATGGATGTTTTTAGG GAGTTTAAGAAGGCTGGATTGAAGGCTGATGTTGTTCTTTATAGTGCTGTGATAGATGCCTTGTGCAAGAATGGGCTGGTGGAATCAGCTGTGTCTTTGC TCGATGAGATGACCAAGGAGGGAATTAGGCCTAATGTGGTCACTTACAATTCTATTATAGATGCATTTGGCCGGTCAGCAATCACGGAATCAGTGGTTGA TGATACTGTTCAGACCAGTCAGTTGCAAATTGAATCTCTATCTTCAGGTGTTGTTGAGGAAGCTACTAAAAGTCTGTTAGCTGATAGGGAGGGCAATCGG ATCATAAAGATTTTTGGGCAGCTTGCTGTTGAAAAGGCAGGTCAAGCAAAGAATTGCAGCGGACAGGAAATGATGTGCATTTTGGCAGTCTTTCACAAGA TGCACGAACTGGAAATCAAGCCAAATGTGGTCACATTTTCAGCCATTTTGAATGCTTGCAGTCGTTGTAATTCCTTTGAAGATGCTTCAATGTTATTGGA GGAGCTCCGGTTATTTGATAACCAGGTTTATGGTGTGGCCCATGGACTTCTTATGGGTTATAGAGAAAATGTTTGGGAGCAAGCACAATCCCTCTTTGAT GAAGTTAAATTGATGGATTCTTCAACAGCATCTGCCTTTTATAATGCCCTGACTGACATGTTATGGCACTTTGGTCAGAAAAGAGGTGCACAGCTTGTTG TGCTCGAAGGGAAACGTAGACAAGTGTGGGAGAATGTTTGGTCTGATTCTTGCTTAGATTTGCATCTAATGTCTTCCGGGGCTGCTCGAGCAATGGTTCA TGCATGGTTGCTTAACATACGCTCTATAGTGTTTGAGGGTCATGAGTTGCCAAAATTATTGAGCATATTGACTGGATGGGGAAAACACAGCAAAGTAGTT GGTGACAGTACGCTAAGGCGAGCTATCGAGGCTCTACTCATGGGCATGGGTGCACCCTTTAGGTTAGCCAAATGCAACTTAGGTCGATTTATATCAACTG GATCTGTTGTTGCTGCGTGGTTGAGAGAATCCGGAACACTAAAAGTGCTTGTACTTCATGATCACAGAACGGAGCAAGAAAATTTGAGGTTTGGTCAAGC CTCAAATCTGCAAACGCTTCAATTGTAA
AA sequence Show only first row Show all	>Potri.014G118500.1 pacid=42763370 polypeptide=Potri.014G118500.1.p locus=Potri.014G118500 ID=Potri.014G118500.1.v4.1 annot-version=v4.1 MASTPPHCSITGTTKPYHNNPYPHSHFKNHRQTHHQNPHQRWTANQRVSLTKPPLPPSSRNAPKPPATTTTTTTTHHPQIHPTFPSLQSPKSELASDFSG RRSTRFVSKLNFGRPRTTMGTRHTSVAEEALQNVIEYGKDEGALENVLLNFESRLSGSDDYIFLLRELGNRGDCKKAICCFEFAVKRERKKNEQGKLASA MISTLGRLGKVEIAKSVFEAALIEGYGNTVYAFSAIISAYGRSGYCDEAIKVFDSMKHYGLKPNLVTYNAVIDACGKGGVEFKRVVEIFDEMLRNGVQPD RITFNSLLAVCSRGGLWEAARSLSSEMLNRGIDQDIFTYNTLLDAVCKGGQMDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRFDDALNLFNEMKFL CISLDRVSYNTLLSIYAKLGRFQEALDVCREMENCGIRKDVVTYNALLGGYGKQCKYDEVRRVFGEMKAGRISPNLLTYSTLIDVYSKGGLYREAMDVFR EFKKAGLKADVVLYSAVIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSAITESVVDDTVQTSQLQIESLSSGVVEEATKSLLADREGNR IIKIFGQLAVEKAGQAKNCSGQEMMCILAVFHKMHELEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRENVWEQAQSLFD EVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPKLLSILTGWGKHSKVV GDSTLRRAIEALLMGMGAPFRLAKCNLGRFISTGSVVAAWLRESGTLKVLVLHDHRTEQENLRFGQASNLQTLQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.014G118500 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	4.24	0.9510
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	4.47	0.9596
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G224900 [exp]	5.65	0.9625
AT5G55740		CRR21	chlororespiratory reduction 21...		Potri.006G155400 [exp]	8.66	0.9601
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.017G065600 [exp]	11.61	0.9408
AT1G29700			Metallo-hydrolase/oxidoreducta...		Potri.008G117600 [exp]	18.43	0.9536
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	26.05	0.9501	APG2.1
AT5G01590			unknown protein		Potri.016G123900 [exp]	27.92	0.9419
AT4G18740			Rho termination factor (.1.2.3...		Potri.011G069300 [exp]	28.24	0.9345
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	29.39	0.9287

Compare expression of checked genes

Potri.014G118500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.