Plant FIBer expression Database

Potri.014G118600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62370 502 / 2e-179 heme binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023692
[exp]
518 / 0 AT3G62370 511 / 0.0 heme binding (.1)
Lus10011771
[exp]
517 / 0 AT3G62370 508 / 0.0 heme binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF09459 EB_dh Ethylbenzene dehydrogenase
Representative CDS sequence
>Potri.014G118600.1 pacid=42764382 polypeptide=Potri.014G118600.1.p locus=Potri.014G118600 ID=Potri.014G118600.1.v4.1 annot-version=v4.1
ATGCTTCTTCGACTTCTCTTGCTACTATCGGTTCTTGGCTCGTCCTGGATCGGATGGGTCAATTCACATCAGGAATCAGGTGAGTGGAGCTGCGAGTCCG
ACGAAGAGATCAGAATAGAAGCCGAGTTCAAGCCTGGATTCATCACCCTCGATGGCCACGCCGATGATTGGAAAGACATTGATGGCTTGGACTCCTCACT
GCTTCCTGCTCTCGACCCCGATGACGATAAAAAATACACAGGAGGAAAAATGACCGTCAAGGCCTTGCATGATGGTAACGATATGTTTTTCTTGTTGCAA
GTTGATGGGAACTATGCTTATACAAAAGGTGATAACAAGAAATGCCCATCAGTTGCTCTCATGTTTCCGATTGGCGATGAAGCAACCTATCACAATATGG
GTGGCTGCAAGGAGGGAACTGGTACTTGCAATAGGAAGACTTGCAAAGGTCATGAAGTTGATATTATGCACTTCTCAATTGGAAATGCTATCCCAGGAAG
ACTCTATGGTGGGAATCCATTAGACAACGGAGAAGGAAATGGAGGTGACAGGTTTGGTCATTTGGTTGATCTCTATTCTTGGAATCCACACTGTAGATAC
CTTGATGGCACTGGTCCTTCAGGAAATGATTCTAGTGGCCAGAATAACTGGAAGGGGGCATGGTGGCACAGTAGCTTCAATGTCCACTCAGGTTTTGTAG
AGGAAGACAGTCCTTATACATCAGATAGTCAGAAGGGAACGTATTTCTTTGAATTCTCTCGGCCTTTAAGAACCATGGATCGTCTCCAACAGGATGCTCA
GTTTACAATTGGTGGATCTAGCAAGATGGCTGTCGCATTCTGGTATCCAGTTGACGGGAATTCATGGCATGGATCTGGTCACTATTCTGTCAACTGTGAT
TGGATACCCCTGGACATCTCTCCAGGCAGTTCTATGTTAAAGGCATCTACAACAGGCAGCTCAGGAGATGTTGCCAGTGCCTTTGCCCTTCTATTCTCAG
TTGTCTCTATATGTCTCTCTGTTTTTGTGGGATATAGAGCAGCAACTAGATCCAGGAATGAACCCTATGAAGCAGTGGGAAATCTTTAG
AA sequence
>Potri.014G118600.1 pacid=42764382 polypeptide=Potri.014G118600.1.p locus=Potri.014G118600 ID=Potri.014G118600.1.v4.1 annot-version=v4.1
MLLRLLLLLSVLGSSWIGWVNSHQESGEWSCESDEEIRIEAEFKPGFITLDGHADDWKDIDGLDSSLLPALDPDDDKKYTGGKMTVKALHDGNDMFFLLQ
VDGNYAYTKGDNKKCPSVALMFPIGDEATYHNMGGCKEGTGTCNRKTCKGHEVDIMHFSIGNAIPGRLYGGNPLDNGEGNGGDRFGHLVDLYSWNPHCRY
LDGTGPSGNDSSGQNNWKGAWWHSSFNVHSGFVEEDSPYTSDSQKGTYFFEFSRPLRTMDRLQQDAQFTIGGSSKMAVAFWYPVDGNSWHGSGHYSVNCD
WIPLDISPGSSMLKASTTGSSGDVASAFALLFSVVSICLSVFVGYRAATRSRNEPYEAVGNL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G62370 heme binding (.1) Potri.014G118600
[exp]
0 1
AT4G35260 IDH-I, IDH1 isocitrate dehydrogenase I, is... Potri.005G099600
[exp]
1.00 0.9022
AT1G73760 RING/U-box superfamily protein... Potri.012G053800
[exp]
10.24 0.7767
AT2G16460 Protein of unknown function (D... Potri.009G123700
[exp]
21.54 0.7409
AT4G17090 CT-BMY, BMY8, B... BETA-AMYLASE 8, BETA-AMYLASE 3... Potri.001G148900
[exp]
22.51 0.8061 Pt-BMY.1
AT1G01980 ATSEC1A FAD-binding Berberine family p... Potri.011G158500
[exp]
25.23 0.7952
AT5G40650 SDH2-2 succinate dehydrogenase 2-2 (.... Potri.001G338400
[exp]
29.73 0.7327 SDH2.1
AT4G01500 B3 NGA4 NGATHA4, AP2/B3-like transcrip... Potri.012G013700
[exp]
31.43 0.8053
AT1G35520 ARF ARF15 auxin response factor 15 (.1) Potri.012G012950
[exp]
41.13 0.7813
AT5G61510 GroES-like zinc-binding alcoho... Potri.004G233800
[exp]
43.47 0.7582 Pt-TED2.2
AT2G38740 Haloacid dehalogenase-like hyd... Potri.001G147300
[exp]
53.23 0.7127

Potri.014G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.