Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02010 993 / 0 Protein kinase superfamily protein (.1) AT2G20300 378 / 1e-120 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 380 / 1e-117 Protein kinase superfamily protein (.1) AT1G20650 317 / 1e-101 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G20530 317 / 2e-101 Protein kinase superfamily protein (.1) AT5G13160 316 / 3e-100 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G58690 314 / 3e-100 Protein kinase superfamily protein (.1) AT3G28690 312 / 7e-100 Protein kinase superfamily protein (.1.2.3) AT5G18610 317 / 1e-99 Protein kinase superfamily protein (.1.2) AT5G38560 321 / 3e-99 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G194700 [exp] 1232 / 0 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 402 / 1e-126 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 391 / 5e-125 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 391 / 7e-125 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 369 / 9e-116 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 368 / 5e-113 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 332 / 3e-106 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 331 / 9e-106 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 320 / 1e-102 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011466 [exp] 947 / 0 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037526 [exp] 924 / 0 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10027635 [exp] 396 / 2e-122 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011917 [exp] 381 / 1e-121 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 380 / 6e-121 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10011933 [exp] 389 / 2e-119 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 332 / 2e-106 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040050 [exp] 320 / 1e-102 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 321 / 3e-101 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019621 [exp] 316 / 4e-101 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G119100.1 pacid=42762594 polypeptide=Potri.014G119100.1.p locus=Potri.014G119100 ID=Potri.014G119100.1.v4.1 annot-version=v4.1 ATGTCGGTGCTTGCAGTTTCAAATACCACCGGATTATCAAGAAGAGTCTGGTATTTGTTTCTGCAGCTTTTCATCAATTCATGTTATGTAATCTCCATCA TCAATGCTGATTTAGCTGATCATCAGTTTGAAGGACCTATCTTATCTCCGTCTAGAGTGCCTTCGGATGCACCAGCCATTCCTGATCTACCCCTCCCAGC CAATCTACCATTGTTACATAAACCACGGGAAAAACATTTCTCACCTCATGGTGCACCAACATTTGTGGTACCACCAGCCCATCCTCCTAACTATGGTCCA CTGATAACTTCTGGTCACCCCCCTACTAGTTCACGCTTGTCTAAACCATCAATGAAGAAGAATGGATTGGTGCCTCCCAGTGTTGGATTGGTAGATGTTG CTCCTACTCAGTCTGGTGATGGCACAAATCCTACTGGTTTAGCTCAGCCCCCATTATCACCTTCCGTCTCTGATTGTTGTAAACCAGACATGGTGCTGAA ACGAGGAAGTCATGATTGCCACTGTGTGTATCCAATAAAGCTTGATCTTCTCCTTTTGAATGTCTCACAAAATCCCAATTGGAACATGTTTCTAGAAGAA CTAGCTTCCCAGCTTGGCATGCGAGTTTCTCAAATTGAGCTGATAAACTTTTATGTACTAAGCCTATCCAGATTAAATATTTCAATGGATATCACTCCTC ACACGGGAATCAGTTTCTCTGCCAGTGATGCATCTGCCGTAAACTCTTCACTTACCTTTCATAAGGTTCATTTTGACTCCACTCTTGTGGGTGATTATAA ACTCCTGAATCTTACTTGGTTTGAACCTCCAACACCTTCACCAGCTCCTATTGTTGCTTCATCACCTATGAAGGCACCGGTATATCAATCTTCAACTTCA TCAGCAGTTGGTTCTTCAAAGAAAGGCAAACATACAAATTTGATTCTTATTCTGGGTATTGGTGCTGGTATTGTGATTATTGCCATTGTATCTATGCTTA TAATTTGTTCGTGTGCATTCCGCAAAGGGAAGCCTAAAGCATCCTCTAAAGAAACTGTAAAGCCAAGTACCATAGATCCAGCTCCAGCTCCAGCAGCAGG GTCTCTTCCACATCCTTCAAGTACACGGTTTCTAGCCTATGAAGAACTTAAAGTAGCAACAAACAACTTTGAACCTGCAAGCATACTTGGAGAGGGTGGG TTTGGTAGAGTTTTCAAAGGTGTCTTAAGTGATGGCACAGCTGTAGCAATTAAGAGGCTTACTAATGGAGGGCAACAAGGGGATAAAGAATTTTTGGTGG AGGTTGAGATGCTTAGCAGGCTGCATCACCGTAATCTTGTCAAACTTGTGGGCTACTATAGCAGTCGTGACTCTTCACAAAACCTACTGTGCTATGAGCT TGTTCCAAATGGAAGCCTGGAGGCCTGGCTCCATGGTCCTCTGGGTGTAAACTGTCCTCTGGATTGGGATACCAGAATGAAGATTGCACTTGATGCTGCA AGAGGACTTGCATACCTACATGAGGATTCACAACCCTGTGTGATCCACAGAGATTTCAAGGCGTCCAATATATTGCTCGAGAACAATTTTCAGGCTAAAG TTGCTGATTTTGGACTTGCCAAACAGGCGCCTGAAGGCAGAGCAAATTATCTGTCTACTCGTGTCATGGGAACATTTGGGTATGTAGCCCCTGAGTATGC TATGACCGGACATCTACTAGTAAAGAGTGATGTTTATAGCTATGGAGTTGTCCTCCTTGAGTTGCTGACTGGAAAGAAGCCTGTTGATATGGCACAGCCA TCCGGTCAAGAGAACCTTGTCACTTGGGCCAGGCCCATTCTGAGAGACAAGGATCGGTTAGAAGAGCTTGTTGATCCAAGGCTTGGAGGAAAATATCCGA AGGAGGATTTTGTACGAGTTTGCACAATTGCAGCAGCTTGTGTGGCCCCTGAGGCAAGCCAGCGACCAACTATGGGTGAAGTGGTACAGTCTCTTAAAAT GGTGCAGCGTGTAATGGAATATCAAGATTCCATGTTAGCCTCCAATGCCCGGGCCAACCTGAGACAGTCATCTACTACCTTTGAATCTGATGGGACATCT TCAATGTTCTCATCTGGTCCGTACTCTGGTCTAAGTGCCTTTGATAACGACAACATCTCTCGGACAGCAGTTTTCTCAGAAGATCTTCATGAAGGACGAT GA
AA sequence Show only first row Show all	>Potri.014G119100.1 pacid=42762594 polypeptide=Potri.014G119100.1.p locus=Potri.014G119100 ID=Potri.014G119100.1.v4.1 annot-version=v4.1 MSVLAVSNTTGLSRRVWYLFLQLFINSCYVISIINADLADHQFEGPILSPSRVPSDAPAIPDLPLPANLPLLHKPREKHFSPHGAPTFVVPPAHPPNYGP LITSGHPPTSSRLSKPSMKKNGLVPPSVGLVDVAPTQSGDGTNPTGLAQPPLSPSVSDCCKPDMVLKRGSHDCHCVYPIKLDLLLLNVSQNPNWNMFLEE LASQLGMRVSQIELINFYVLSLSRLNISMDITPHTGISFSASDASAVNSSLTFHKVHFDSTLVGDYKLLNLTWFEPPTPSPAPIVASSPMKAPVYQSSTS SAVGSSKKGKHTNLILILGIGAGIVIIAIVSMLIICSCAFRKGKPKASSKETVKPSTIDPAPAPAAGSLPHPSSTRFLAYEELKVATNNFEPASILGEGG FGRVFKGVLSDGTAVAIKRLTNGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSSRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAA RGLAYLHEDSQPCVIHRDFKASNILLENNFQAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGKKPVDMAQP SGQENLVTWARPILRDKDRLEELVDPRLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRVMEYQDSMLASNARANLRQSSTTFESDGTS SMFSSGPYSGLSAFDNDNISRTAVFSEDLHEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02010			Protein kinase superfamily pro...		Potri.014G119100 [exp]	0	1
AT5G54920			unknown protein		Potri.001G423200 [exp]	4.47	0.7396
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	8.24	0.7607
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.012G016900 [exp]	9.59	0.6654
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	10.24	0.7475
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	17.74	0.6687
AT3G45850			P-loop containing nucleoside t...		Potri.016G082400 [exp]	31.17	0.7057
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.018G045100 [exp]	33.74	0.6288	HB1.5
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G086400 [exp]	39.89	0.7088	WRKY13.1
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.004G173900 [exp]	58.50	0.5914
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	60.33	0.6809

Compare expression of checked genes

Potri.014G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.