Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02550 98 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G47340 81 / 5e-18 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G36659 67 / 7e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G14300 55 / 2e-08 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT1G23350 50 / 1e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53840 52 / 2e-07 ATPME1 pectin methylesterase 1 (.1) AT5G27870 47 / 7e-06 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51520 44 / 4e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46940 43 / 4e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G05610 43 / 0.0001 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G194900 [exp] 218 / 3e-71 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 216 / 2e-70 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G119400 [exp] 176 / 1e-53 AT1G02550 78 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G195000 [exp] 165 / 2e-50 AT1G02550 76 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.013G013400 [exp] 55 / 2e-08 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 55 / 2e-08 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162700 [exp] 54 / 3e-08 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.010G209800 [exp] 52 / 4e-08 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.003G072700 [exp] 52 / 1e-07 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010002 [exp] 122 / 7e-32 AT3G14300 / A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10025021 [exp] 120 / 8e-32 AT3G14300 63 / 2e-10 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10002420 [exp] 112 / 2e-29 AT3G36659 54 / 2e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001448 [exp] 68 / 2e-14 AT1G23350 48 / 7e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10018615 [exp] 64 / 1e-12 AT1G02550 49 / 3e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038295 [exp] 61 / 1e-10 ND 37 / 0.005 Lus10038294 [exp] 57 / 2e-09 ND 42 / 4e-04 Lus10025807 [exp] 57 / 3e-09 ND 39 / 0.002 Lus10031711 [exp] 56 / 3e-09 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10025806 [exp] 56 / 1e-08 ND 40 / 0.002
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.014G119200.1 pacid=42762348 polypeptide=Potri.014G119200.1.p locus=Potri.014G119200 ID=Potri.014G119200.1.v4.1 annot-version=v4.1 ATGGAGCTTAACAAGTTCATCCTTCTCCTCCTGTTTTCCTCTCCTCTTCTCTCATTCGTTGCCGAGGCCATTTGTGTCCCTCGTAACGTCAGCAATCCTG AGGCTACAGGGCCTGCCTTCGTCCTAGGACCGGCCTTGTCTTTCCCATCTTCACCGCCCGTTCAGGCCCCATTACCCCCGACAGATCCCTCCCCCTCCCC ACAAGCTTCCTCCCCATCACCACCTGTTTCTCCAACAAAATCAATATCGATATTGCCATCACCAGCCAGCAATTATGCACTGACGAAAATATGTGGCTTG ACCGATTACCCAGCAGAATGTATTGCCACCATTGCTCCTTACCTAACAGGAAGAACCGATCCCATTTCAGTCCTTAAAATGGGAATGCAAGCTCTCCACA AAAGTTTTGAGGAAGCCACTGCCGTTGCCACAAAACTAAACAAGGATCCCTCTTCATCAGCCGTGGTTAAGGACTCCCTGGACACATGCCTAGAGTCTTT TGATAGCGGAATGTCTGACCTCAATGATGCTTTGATTGCAATTTCCTCCCACGACATTGGCAAACTGAGTACAATGCTTAGTGCCACCATAACATACCCT GACACATGTGAGGAAGCGTTTGCTGAGCGACCAGGACTCGATTCGCCAATGAAGGCGATGGATCGGAAGTTGACTACGTTGGCTAGCATCAACCTGGCAA TTTCAGCATCTCTCCACTGGAGTTAA
AA sequence Show only first row Show all	>Potri.014G119200.1 pacid=42762348 polypeptide=Potri.014G119200.1.p locus=Potri.014G119200 ID=Potri.014G119200.1.v4.1 annot-version=v4.1 MELNKFILLLLFSSPLLSFVAEAICVPRNVSNPEATGPAFVLGPALSFPSSPPVQAPLPPTDPSPSPQASSPSPPVSPTKSISILPSPASNYALTKICGL TDYPAECIATIAPYLTGRTDPISVLKMGMQALHKSFEEATAVATKLNKDPSSSAVVKDSLDTCLESFDSGMSDLNDALIAISSHDIGKLSTMLSATITYP DTCEEAFAERPGLDSPMKAMDRKLTTLASINLAISASLHWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02550			Plant invertase/pectin methyle...		Potri.014G119200 [exp]	0	1
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	24.91	0.7047
AT5G25310			Exostosin family protein (.1)		Potri.018G025400 [exp]	30.49	0.6860
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	32.18	0.6865
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	77.07	0.6687
AT1G10850			Leucine-rich repeat protein ki...		Potri.010G097200 [exp]	77.28	0.6711
AT1G27360	SBP	SPL11	squamosa promoter-like 11 (.1....		Potri.002G142400 [exp]	89.09	0.6431
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.003G194900 [exp]	140.64	0.6198
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.019G076600 [exp]	144.04	0.6458
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	154.20	0.6273

Compare expression of checked genes

Potri.014G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.