Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47350 273 / 5e-85 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT1G56460 245 / 3e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT3G06660 206 / 1e-60 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195132 [exp] 461 / 7e-161 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.013G008300 [exp] 420 / 7e-141 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.005G014000 [exp] 384 / 3e-127 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.002G195066 [exp] 234 / 5e-74 AT2G47350 45 / 2e-05 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.008G106200 [exp] 228 / 1e-68 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Potri.010G144000 [exp] 41 / 0.0005 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010914 [exp] 325 / 3e-104 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10031419 [exp] 309 / 3e-98 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10016899 [exp] 216 / 8e-64 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Lus10037760 [exp] 215 / 2e-63 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04438 [poplar] [flax] zf-HIT HIT zinc finger CL0175 [poplar] [flax] PF04795 [poplar] [flax] PAPA-1 PAPA-1-like conserved region
Representative CDS sequence Show only first row Show all	>Potri.014G119600.1 pacid=42764532 polypeptide=Potri.014G119600.1.p locus=Potri.014G119600 ID=Potri.014G119600.1.v4.1 annot-version=v4.1 ATGGAAGAGTTGGGTCTTGTTCAGTTTGATGCCATGGGAAGCACAGTAAGAAAGAAGAGGAGTCAAATTTCTCGCCGACCTAAGGATTCCCAGACATTTA CTGACAATTATGATCGTTCATCATTATCGATATCACCACCTTCAGATGACATGAGCAAGGCTTCCAGTGATGAGAATGCTGATAATTGTAGGAGGAAAGA ATTTGGTCTTAATCAATCCGTGTCCAGGGTTTCTTCGGCTACTACTAGAGCTGAAAGAAAAAGAGCATTTTCTGACAGTCACCCAAGGAGAAGTGTGGTT AACAATAAAACTTCTCGTGAAGGTGCTCTTGCCCCTGCGAATTGGAGAAGCAAAAGCAAGCTGAAGGAATGCATGGATGTGGAGTCTAGAACTGCAAATA TGTATTGTGGAAGGAATGGTGAAAGTTGGAGTTCAGAGCAGTCAGGAGTGAGTTTAGATGTTTTAGGAAATGAAAGCAAGTTTAAAAAGGTCAAGTTTAA GGTTGGTGATGTGACACACACAATTAATGCCAACTCGACTACTAATGGCGTGCCTTCTACAAAGAATCCCCGATTCTCAGACACCTCCAACACAAGGCAG AAACTTAGTCTTCAGGGGAATTTAGAGGAGGAACGTTTTGTTTCAGGTAAGAGGCCAGGTTTGCAAGGAGTTCCTTGGAAGGAATTCTCTAGAGGAGGGT TTAGTCTCGGGAAAGAGGATTTTTTAATGGGGAAGACTTCGGGCAAAAATACTGCTGGGAAACAAGGAAATAAGTACGAACGTAAGAACAAGCGGGCCCC CAAGAGGCATGTTCTGGATGGGGAATTTGGTGAGGATGACGATGACGACGAGATCCGATACCTAGAGAAACTCAAGTTAAAAGTCCCATCAGGACATAAG GAAGATGATGGAAATGATGATGATGAATCAAGTAAGAAACAACGAAAACTTTCTACCCTGGGAAGCATTGGTGCTTCGAGGCTGGTTAAAGATGGGAAAA AAATATCCAGATCAGACCAAGCACCAGAGGATGAAGATTACGAGGAAGAAGAACCATTATCTGATGGTGAGTTCGCAGGTAGTAAGAAGAAGCAGAAAAA GGAATATGTTGAGTCATTGACAGATGGTAAGAGGGAGCTGACTTTAACTAAGCGTCAACGGGCTCTTCAGTCAAGCAAAGATGGCTCTTCTGTTCCTGAT GCTAACTTAATTGAGTTTCCAAATGGATTACCACCTGCACCATCAAAAAAGCAAAAGGAGAAACTTACGGAGGTCGAGCAGCAATCAAAGAAAGCTGAGG CTGCTCAGAGACGAAGATTGCAGGTTGAGAAGGCTGCTAGGGAATCTGAGGCTGAAGCTATAAGAAAAATTCTCGGTCAAGATTCCAGCAGAAAAAAACG AGAAGAGAAAGTGAAGAAGCGTCTGGAAGAGTTGGCACAGGAGAAGGCTACCAACGCCGAGATGCATGCATCGAGTACCATCAGATGGGTCATGGGTCCT ACAGGGACTGTGGTGACATTTCCCAAAGAAATGGGTCTCCCTAGTATATTCGACTCTAAACCCTGCAGCTATCCTCCTCCAAGAGAGAAGTGCGCGGGCC CTTCTTGTACTAACCCATACAAGTATCGAGATTCCAAGTCGAAGCTTCCGCTTTGCAGTCTACAGTGCTACAAGGCAATTCAGCAACAGAGCCAGCATGA AACTAACTGA
AA sequence Show only first row Show all	>Potri.014G119600.1 pacid=42764532 polypeptide=Potri.014G119600.1.p locus=Potri.014G119600 ID=Potri.014G119600.1.v4.1 annot-version=v4.1 MEELGLVQFDAMGSTVRKKRSQISRRPKDSQTFTDNYDRSSLSISPPSDDMSKASSDENADNCRRKEFGLNQSVSRVSSATTRAERKRAFSDSHPRRSVV NNKTSREGALAPANWRSKSKLKECMDVESRTANMYCGRNGESWSSEQSGVSLDVLGNESKFKKVKFKVGDVTHTINANSTTNGVPSTKNPRFSDTSNTRQ KLSLQGNLEEERFVSGKRPGLQGVPWKEFSRGGFSLGKEDFLMGKTSGKNTAGKQGNKYERKNKRAPKRHVLDGEFGEDDDDDEIRYLEKLKLKVPSGHK EDDGNDDDESSKKQRKLSTLGSIGASRLVKDGKKISRSDQAPEDEDYEEEEPLSDGEFAGSKKKQKKEYVESLTDGKRELTLTKRQRALQSSKDGSSVPD ANLIEFPNGLPPAPSKKQKEKLTEVEQQSKKAEAAQRRRLQVEKAARESEAEAIRKILGQDSSRKKREEKVKKRLEELAQEKATNAEMHASSTIRWVMGP TGTVVTFPKEMGLPSIFDSKPCSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAIQQQSQHETN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.014G119600 [exp]	0	1
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	3.16	0.7585
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.010G108500 [exp]	4.24	0.7328
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	11.83	0.6902
					Potri.019G014316 [exp]	12.84	0.7389
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	18.49	0.7471
AT3G21480			BRCT domain-containing DNA rep...		Potri.010G014700 [exp]	21.63	0.7379
AT3G12590			unknown protein		Potri.008G052700 [exp]	23.57	0.7396
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	24.24	0.7162
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.002G080100 [exp]	26.45	0.6309
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.005G135100 [exp]	27.56	0.7337

Compare expression of checked genes

Potri.014G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.