Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58710 124 / 6e-34 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT4G01250 123 / 2e-33 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT2G34830 123 / 1e-32 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G29280 118 / 5e-32 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT1G30650 122 / 6e-32 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT5G52830 105 / 3e-26 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT5G45050 107 / 4e-26 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G23320 103 / 6e-26 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G24240 102 / 3e-25 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G30590 102 / 6e-25 WRKY WRKY21 WRKY DNA-binding protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195300 [exp] 379 / 1e-134 AT2G34830 120 / 1e-31 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Potri.011G070100 [exp] 123 / 9e-34 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.001G460600 [exp] 124 / 1e-32 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.004G060900 [exp] 120 / 1e-32 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1) Potri.011G157100 [exp] 122 / 5e-32 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.002G164400 [exp] 117 / 1e-30 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.014G090300 [exp] 116 / 2e-30 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.003G132700 [exp] 112 / 4e-29 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.004G072000 [exp] 112 / 1e-28 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007305 [exp] 119 / 4e-33 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10038426 [exp] 121 / 1e-32 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10029252 [exp] 119 / 3e-32 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10007907 [exp] 116 / 3e-30 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 113 / 5e-30 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10005428 [exp] 109 / 9e-29 AT1G29280 194 / 1e-61 WRKY DNA-binding protein 65 (.1) Lus10015229 [exp] 108 / 4e-28 AT1G29280 197 / 1e-62 WRKY DNA-binding protein 65 (.1) Lus10039295 [exp] 104 / 4e-26 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10032303 [exp] 103 / 8e-26 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10027538 [exp] 104 / 1e-25 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G119800.1 pacid=42763977 polypeptide=Potri.014G119800.1.p locus=Potri.014G119800 ID=Potri.014G119800.1.v4.1 annot-version=v4.1 ATGGATAGTTCTCCCTCTAGAAAATTGGACTCTAATGTTTCCGAACTCACCCCGGAAACTCAGACATCTAAAAGAAGGAAGATGGTTGAGAAGATTGTTG TTAGAGTGAGGATTGGAGAAAATGCTGTGAAATTAAAGAACGAAGGGCCACCTTCTGATTTCTGGTCTTGGAGGAAATATGGGCAAAAACCTATTAAAGG ATCTCCTTATCCAAGGGGCTATTACAGGTGTAGTACATCGAAGGGCTGTTCAGCCAAGAAACAAGTGGAAAGATGCAGGACAGATGCTTCGGTACTCATC GTTACTTACACCTCAAATCACAACCATCCAGGTCCTGATCTCCATGACTCTAACGTGAACCAACAACCAAGAGATCCCGAAACCCCACCGACTGATCTTG TAGATCATCCCATAACTCCCAAACAAGAGAAACCAGAAGAAGAAACAGGAGAAAGGCACGATCATCCCATCATGCCAAGCACTGATGAAGATGTCAGTGA AGGTCACAATTTCCACTACTTAGAATCCCCAATAAGAATTCCTCAAGATATCATGATTAGCCAGGACTACCCTTTCACTGAGAACTCGGAGAAAAGTCAT GACACATTGGGTATTGTCTTCGACGAAGAGCCCATCTGTTGCTCCAGACTGATGACATTTTCAGCACCCAAATCAGAAGAGAACAATGACTTCTTTGATG AGCTAGAAGAGCTACCCACATCTTCATCTTTCACTAGCTTCGTGAGGGGCAATTTTTTCGATGAAAGGATTCCTGTTGTCCCTTCTTGA
AA sequence Show only first row Show all	>Potri.014G119800.1 pacid=42763977 polypeptide=Potri.014G119800.1.p locus=Potri.014G119800 ID=Potri.014G119800.1.v4.1 annot-version=v4.1 MDSSPSRKLDSNVSELTPETQTSKRRKMVEKIVVRVRIGENAVKLKNEGPPSDFWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERCRTDASVLI VTYTSNHNHPGPDLHDSNVNQQPRDPETPPTDLVDHPITPKQEKPEEETGERHDHPIMPSTDEDVSEGHNFHYLESPIRIPQDIMISQDYPFTENSEKSH DTLGIVFDEEPICCSRLMTFSAPKSEENNDFFDELEELPTSSSFTSFVRGNFFDERIPVVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58710	WRKY	ATWRKY69, WRKY6...	RABIDOPSIS THALIANA WRKY DNA-B...		Potri.014G119800 [exp]	0	1
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Potri.001G238800 [exp]	6.78	0.7427
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	11.18	0.8074
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G448000 [exp]	14.00	0.6724
					Potri.017G022262 [exp]	18.11	0.7780
					Potri.019G017302 [exp]	19.44	0.7475
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.001G113400 [exp]	21.35	0.7679
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025800 [exp]	32.58	0.7865
AT1G10040			alpha/beta-Hydrolases superfam...		Potri.002G113000 [exp]	47.62	0.7397
AT3G61670			Protein of unknown function (D...		Potri.014G095700 [exp]	49.21	0.7540
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	49.98	0.6949

Compare expression of checked genes

Potri.014G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.