Plant FIBer expression Database

Potri.014G119900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47360 205 / 9e-65 unknown protein
AT1G02570 167 / 2e-50 unknown protein
AT1G02575 146 / 2e-42 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G195400
[exp]
392 / 9e-139 AT2G47360 162 / 3e-48 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025023
[exp]
146 / 1e-41 AT1G02570 116 / 1e-30 unknown protein
Lus10010004
[exp]
97 / 1e-23 AT1G02570 96 / 2e-23 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G119900.1 pacid=42763137 polypeptide=Potri.014G119900.1.p locus=Potri.014G119900 ID=Potri.014G119900.1.v4.1 annot-version=v4.1
ATGGGGTGGCAAAAGAAGGCAAAAAAGCTCTTGGGCTGCGCAATTTTCATAGAACCCTTCCATATCTTGATCATTACCCTCCTCAGTCTCTTGCTGCCCC
TCTCATTTCTCCTCCTGACCAGGCTCTCTAGTTACAACTATCTGCTGACCATCACGTCTGATCCTGTACAACAACCACCATCTTCTTTCATCACGTCTTT
ATTCCTGTCAATCAACACAGCAGTTCTGTATTTTCTTGTTTCAGTTGTTAGCGTAGCCACTCTTATTCATGGCTTGACAGGAAAAATCACCCTTCTAAGT
GAGTCAACAGGCGCAACTTACCGACCCGGATTGTACACTGCATGGATTATGTTATGTACGCTACAGATTTGTGTTGGCTTGGGCGTTCAACGGAGCGTAT
CTGCTGGGATGTTCGATGGTTATGGTTTTGATATTCAAAGAAGTTTCTTGAGTAGAGTTATATTTTTCTTGGGGTTGCATGAGACCATGATCCATTGGTC
CAGGACTGTTGTTAAGCCAGTGGTTGATGACACAATTTTTGGTGCGGCTAGAGACGAGAAGTGGGAACAAAGGGTGGCTGTAGCTTTGAGCTGTGGTACT
TTGTGGTGGTGGAGGTTAAGGAATGAAGTTGAGTCTTTGGTTTTTGTGGCAGAGGCAAAGATAGAGCTGCTGATGGATTTAGCAGTGGCTGACATGGTTG
GTTGGTGGCTGTATTACCTGACGGTAACAATTGGAATGGTAAGACTTGTGAAGGGTCTTATCTGGGTTGGGGTGATCTTGCTTTGTAAGAGGGTAAGAAG
AAGGAATTCTGCTGAAACTTGTGAGCTGGATGAATTAGACAAGGTCTGA
AA sequence
>Potri.014G119900.1 pacid=42763137 polypeptide=Potri.014G119900.1.p locus=Potri.014G119900 ID=Potri.014G119900.1.v4.1 annot-version=v4.1
MGWQKKAKKLLGCAIFIEPFHILIITLLSLLLPLSFLLLTRLSSYNYLLTITSDPVQQPPSSFITSLFLSINTAVLYFLVSVVSVATLIHGLTGKITLLS
ESTGATYRPGLYTAWIMLCTLQICVGLGVQRSVSAGMFDGYGFDIQRSFLSRVIFFLGLHETMIHWSRTVVKPVVDDTIFGAARDEKWEQRVAVALSCGT
LWWWRLRNEVESLVFVAEAKIELLMDLAVADMVGWWLYYLTVTIGMVRLVKGLIWVGVILLCKRVRRRNSAETCELDELDKV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47360 unknown protein Potri.014G119900
[exp]
0 1
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.001G320800
[exp]
1.00 0.9580 PtrFLA14-8,FLA14.8
AT2G36880 MAT3 methionine adenosyltransferase... Potri.006G123200
[exp]
2.82 0.9459 AdoMet6
AT5G67210 IRX15-L IRX15-LIKE, Protein of unknown... Potri.005G141300
[exp]
3.00 0.9507
AT3G16920 ATCTL2 chitinase-like protein 2 (.1) Potri.010G141600
[exp]
3.46 0.9529
AT3G15050 IQD10 IQ-domain 10 (.1) Potri.011G096500
[exp]
6.32 0.9365
AT5G18500 Protein kinase superfamily pro... Potri.010G001600
[exp]
6.48 0.9251
AT5G54240 Protein of unknown function (D... Potri.011G126300
[exp]
6.70 0.9402
AT4G34050 CCoAOMT1 caffeoyl coenzyme A O-methyltr... Potri.009G099800
[exp]
7.74 0.9387 CAM1
AT1G17950 MYB AtMYB52, BW52, ... myb domain protein 52 (.1) Potri.005G186400
[exp]
8.54 0.8904 MYB158,MYB.50
AT2G03200 Eukaryotic aspartyl protease f... Potri.019G002100
[exp]
9.16 0.9380

Potri.014G119900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.