Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG913,EMB173.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02020 878 / 0 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT2G23380 472 / 8e-153 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT1G02580 358 / 6e-112 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT5G42400 94 / 4e-19 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G31650 93 / 4e-19 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT4G30860 91 / 6e-19 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G76710 86 / 2e-17 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G05830 87 / 3e-17 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G27910 86 / 1e-16 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 85 / 1e-16 SET29, ATX5, SDG29 SET domain group 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195700 [exp] 1446 / 0 AT4G02020 883 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.005G140200 [exp] 493 / 1e-160 AT2G23380 1042 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.007G045800 [exp] 492 / 2e-160 AT2G23380 1063 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.005G260100 [exp] 97 / 2e-20 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 94 / 3e-19 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G232800 [exp] 91 / 2e-18 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G195400 [exp] 89 / 4e-18 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.014G146300 [exp] 89 / 6e-18 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.018G102100 [exp] 85 / 6e-17 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041386 [exp] 675 / 0 AT4G02020 489 / 9e-161 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Lus10019336 [exp] 344 / 2e-104 AT2G23380 905 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10009369 [exp] 283 / 2e-82 AT2G23380 804 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10025172 [exp] 99 / 1e-20 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 97 / 3e-20 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10026725 [exp] 92 / 1e-18 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 92 / 2e-18 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10003777 [exp] 86 / 5e-17 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10012626 [exp] 85 / 1e-16 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10016600 [exp] 84 / 1e-16 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.014G120100.6 pacid=42762344 polypeptide=Potri.014G120100.6.p locus=Potri.014G120100 ID=Potri.014G120100.6.v4.1 annot-version=v4.1 ATGGTGTCAAAATCAAGCGACTCTGCCTCTAAATTCAGAAAATCAGATGGAGAACCGTCAAATAACGGTATTGGAAACCTGACATACAAGATGAATCAGC TTAAAAAACAAATTCAAGCGGAAAGGGTTGTTTCGATAAAGGATAAAGTTGAGAGAAACAGAAGGAAACTTGTAGCTGATGTTTCTCAGCTAAGATTAGC AACTTCAAGAACGTTTGTGGGGCAGAATGGAGTTTCTAAAATGATTTCTTTGAGGATCGGAGCTCCTCTTTGTAAGTATGGTGGATTCGCTCAAGGATCG GGTGATAGAGATCTTATCAATGGTCATGAAGTAGCAGTCTCAACAAGTACCAAGCTTCCGTTTGTAGAGAAGATACCTCCGTATACTACCTGGATATTTT TGGACAAGAATCAGAGGATGGCTGAAGACCAGTCAGTGGTTGGCAGGAGACGCATATACTATGATCGACATGGCAGTGAAGCTCTGATTTGTAGTGACAG CGAAGAAGACATAGAACCAGAGGAAGAGAAACATGAATTTTCTGAGGGCGAAGATCGCTTTTTGTGGATGGTCTTTCAGGAACTTGGACTAGCTGAGGAG GTGCTGAATATTGTTAGCCAGTTTATTGGAGTTGGCACTTCAGAAATCCAGGAGCGTTGTAGGATGCTCGCCGAAAAATATAGCAATGACCAAAATGTCA AAGATTCTATTGATTCAGTATCTGAGAGGGGCATATCTCTGGAAAAGAGCCTTAGTGCTGCTTTAGATTCTTTTGATAACCTATTCTGTCGCCGTTGCTT GCTATTTGACTGCCGCCTCCATGGCTGTTCCCAAACTTTGATCAATCCTAGTGAAAAGCAGTCATGCTGGTCTGAATATGAAGATGACAGGAAACCTTGC AGTGATCAATGTAGCCTTCAGCTAAGAGTTCTCAAAGACTTGCCTGAAGGTTCTGTTAATAGTCCCTTGCATAGGACAGAAACTGCAACTTCAGCAGAGG AAAAAAAGACTGCAGCAGCCTCAGATGCTGAAGAGCCAAGCAGTGTTGACCTCATGATAGATGAAAGACATATTTCAGAGAAAGAAATAAATGTTATTTC AGAAGCTGTTGGTAACTTGGAACCTGCTTCTGGAGCTCTGAATTTGGATATTTCTGCTATGGTGATACATAACCAAGAATACATGCGAAAGCGCAAAGTG TCACAATGTACAGATATAGCATCAGATGACTCGTCAAAGTTTCCTGAAGATACGCAGGATTTTAGTAAGAAACAGAAAAGATTATTGCATTTGGATGTCG CTGCTGAAGATATATCAAGTCCTGATTGCGGGTCAACTGCTAAAAAAGCAACTGATCAAATTGAATTTCAGATGACCACAAAAAAGACTACCAATGTTTC CTTTGAAATTGCTTCTTCTGGCACTGAGGAGAACATTGGGGATGGATCAAAGGATGTCTTTGAAGTGCCCGAACCAAAACGGTCATCCTCAGTAGAAAGA CAAGTGGAAGGGGTTTTAAAAAAGTCTGAGTGGAAGCCTATTGAAAAAGAACTTTATCTAAAGGGAGTGGAGATATTCGGGAAAAACAGTTGTCTTATTG CAAGGAACTTACTTTCAGGCTTAAAGACTTGTATAGAGGTGTCCAGTTACATGCGTGAAAGTGGAGCTATGATGCCTCATAGATCTGTTGCACCAAGATC ATTTCTAGAAGACAGTGGGAAGATTGATATAGATTATGCGGAGCAAGATATGCCAACAAGATCACGTTTACTTCGTAGGAGGGGAAGAGCACGGAAACTT AAATATTCTTGGAAGTCTGCTGGTCATCCATCATTTTGGAAAAGAATTGCTGATTGCAAAAATCAGTCCTGTAAGCAGTATACACCTTGTGGATGCCAGT CAATGTGTGGAAAACAGTGCCCTTGTCTGCATAATGGAACTTGCTGTGAGAAATATTGCGGGTGCTCGAAAAGTTGCAAAAATCGCTTCAGAGGATGCCA CTGTGCAAAGAGCCAATGCAGAAGTCGACAATGCCCATGTTTTGCTGCTGGACGCGAATGTGACCCGGATATTTGTAGGAATTGTTGGGTTAGCTGTGGA GATGGTTCATTAGGAGAGCCTCCGAAACGAGGAGATGGCCAATGTGGAAACATGAGGCTTCTTCTAAGGCAGCAGCAGAGGATCCTCTTGGCAAAATCTG ATGTTGCTGGATGGGGAGCCTTTTTAAAGAAACCCGTCAACAAAAATGATTATCTTGGAGAATATACTGGTGAATTGATCTCTCATCGAGAAGCAGATAA GCGTGGGAAGATTTACGACCGTGCCAATTCATCATTCCTTTTTGACTTGAATGATCAGTTTGTCCTTGATGCTTACCGGAAGGGGGATAAGCTGAAATTT GCGAACCATTCATCAAATCCTAATTGCTATGCAAAGGTAATGCTGGTAGTAGGAGACCATCGAGTAGGCATCTTTGCAAACGAGCGTATAGAAGCTAGCG AGGAGCTATTCTATGATTATCGTTATGGGCCAGACCAGACACCTGCATGGGCTCGAAAACCTGAAGGTTCCAAAAGAGATGATTCCACAGTTTCCCAAGG TAGAGCAAAGAAACACCAATCTCACTGA
AA sequence Show only first row Show all	>Potri.014G120100.6 pacid=42762344 polypeptide=Potri.014G120100.6.p locus=Potri.014G120100 ID=Potri.014G120100.6.v4.1 annot-version=v4.1 MVSKSSDSASKFRKSDGEPSNNGIGNLTYKMNQLKKQIQAERVVSIKDKVERNRRKLVADVSQLRLATSRTFVGQNGVSKMISLRIGAPLCKYGGFAQGS GDRDLINGHEVAVSTSTKLPFVEKIPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDRHGSEALICSDSEEDIEPEEEKHEFSEGEDRFLWMVFQELGLAEE VLNIVSQFIGVGTSEIQERCRMLAEKYSNDQNVKDSIDSVSERGISLEKSLSAALDSFDNLFCRRCLLFDCRLHGCSQTLINPSEKQSCWSEYEDDRKPC SDQCSLQLRVLKDLPEGSVNSPLHRTETATSAEEKKTAAASDAEEPSSVDLMIDERHISEKEINVISEAVGNLEPASGALNLDISAMVIHNQEYMRKRKV SQCTDIASDDSSKFPEDTQDFSKKQKRLLHLDVAAEDISSPDCGSTAKKATDQIEFQMTTKKTTNVSFEIASSGTEENIGDGSKDVFEVPEPKRSSSVER QVEGVLKKSEWKPIEKELYLKGVEIFGKNSCLIARNLLSGLKTCIEVSSYMRESGAMMPHRSVAPRSFLEDSGKIDIDYAEQDMPTRSRLLRRRGRARKL KYSWKSAGHPSFWKRIADCKNQSCKQYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDICRNCWVSCG DGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKKPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQFVLDAYRKGDKLKF ANHSSNPNCYAKVMLVVGDHRVGIFANERIEASEELFYDYRYGPDQTPAWARKPEGSKRDDSTVSQGRAKKHQSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	0	1	SDG913,EMB173.1
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	1.41	0.7909
AT1G71980			Protease-associated (PA) RING/...		Potri.013G111500 [exp]	4.47	0.7728
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	6.32	0.7546
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	8.48	0.7652
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016500 [exp]	10.19	0.7453
AT2G20030			RING/U-box superfamily protein...		Potri.002G153400 [exp]	12.24	0.7437
AT1G52080		AR791	actin binding protein family (...		Potri.001G191300 [exp]	12.24	0.7518
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	12.80	0.7645
AT1G25530			Transmembrane amino acid trans...		Potri.010G128300 [exp]	15.19	0.7264
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.010G141700 [exp]	16.24	0.7262

Compare expression of checked genes

Potri.014G120100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.